Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QPR36_RS16425 Genome accession   NZ_CP126577
Coordinates   3367776..3369161 (-) Length   461 a.a.
NCBI ID   WP_024085865.1    Uniprot ID   -
Organism   Bacillus velezensis strain 411     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362776..3374161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS16390 (QPR36_16390) flgL 3362951..3363868 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  QPR36_RS16395 (QPR36_16395) flgK 3363880..3365397 (-) 1518 WP_201489090.1 flagellar hook-associated protein FlgK -
  QPR36_RS16400 (QPR36_16400) - 3365413..3365895 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QPR36_RS16405 (QPR36_16405) flgM 3365910..3366176 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPR36_RS16410 (QPR36_16410) - 3366246..3366665 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  QPR36_RS16415 (QPR36_16415) comFC 3366739..3367428 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  QPR36_RS16420 (QPR36_16420) - 3367434..3367718 (-) 285 WP_057080260.1 competence protein ComFB -
  QPR36_RS16425 (QPR36_16425) comFA 3367776..3369161 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  QPR36_RS16430 (QPR36_16430) - 3369269..3370117 (-) 849 WP_024085866.1 DegV family protein -
  QPR36_RS16435 (QPR36_16435) degU 3370215..3370904 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QPR36_RS16440 (QPR36_16440) degS 3370981..3372144 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  QPR36_RS16445 (QPR36_16445) - 3372366..3373013 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52491.85 Da        Isoelectric Point: 10.1310

>NTDB_id=838902 QPR36_RS16425 WP_024085865.1 3367776..3369161(-) (comFA) [Bacillus velezensis strain 411]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=838902 QPR36_RS16425 WP_024085865.1 3367776..3369161(-) (comFA) [Bacillus velezensis strain 411]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627