Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QPR36_RS16415 Genome accession   NZ_CP126577
Coordinates   3366739..3367428 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain 411     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3361739..3372428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS16380 (QPR36_16380) fliW 3361831..3362262 (-) 432 WP_057080257.1 flagellar assembly protein FliW -
  QPR36_RS16385 (QPR36_16385) - 3362291..3362860 (-) 570 WP_007407476.1 DUF6470 family protein -
  QPR36_RS16390 (QPR36_16390) flgL 3362951..3363868 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  QPR36_RS16395 (QPR36_16395) flgK 3363880..3365397 (-) 1518 WP_201489090.1 flagellar hook-associated protein FlgK -
  QPR36_RS16400 (QPR36_16400) - 3365413..3365895 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QPR36_RS16405 (QPR36_16405) flgM 3365910..3366176 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPR36_RS16410 (QPR36_16410) - 3366246..3366665 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  QPR36_RS16415 (QPR36_16415) comFC 3366739..3367428 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  QPR36_RS16420 (QPR36_16420) - 3367434..3367718 (-) 285 WP_057080260.1 competence protein ComFB -
  QPR36_RS16425 (QPR36_16425) comFA 3367776..3369161 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  QPR36_RS16430 (QPR36_16430) - 3369269..3370117 (-) 849 WP_024085866.1 DegV family protein -
  QPR36_RS16435 (QPR36_16435) degU 3370215..3370904 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QPR36_RS16440 (QPR36_16440) degS 3370981..3372144 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=838901 QPR36_RS16415 WP_196616643.1 3366739..3367428(-) (comFC) [Bacillus velezensis strain 411]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838901 QPR36_RS16415 WP_196616643.1 3366739..3367428(-) (comFC) [Bacillus velezensis strain 411]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603