Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   VDS58_RS06790 Genome accession   NZ_CP141997
Coordinates   1286953..1287870 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain PM0031     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281953..1292870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS06775 (VDS58_06775) trpS 1282535..1283527 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  VDS58_RS06780 (VDS58_06780) oppA 1284270..1285907 (+) 1638 WP_122895148.1 oligopeptide ABC transporter substrate-binding protein OppA -
  VDS58_RS06785 (VDS58_06785) oppB 1286014..1286949 (+) 936 WP_122895147.1 oligopeptide ABC transporter permease OppB -
  VDS58_RS06790 (VDS58_06790) amiD 1286953..1287870 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  VDS58_RS06795 (VDS58_06795) oppD 1287875..1288951 (+) 1077 WP_122895146.1 oligopeptide ABC transporter ATP-binding protein OppD -
  VDS58_RS06800 (VDS58_06800) oppF 1288953..1289870 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  VDS58_RS06805 (VDS58_06805) yjbB 1289977..1291194 (+) 1218 WP_080019554.1 MFS transporter -
  VDS58_RS06810 (VDS58_06810) yjbC 1291358..1291936 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  VDS58_RS06815 (VDS58_06815) spx 1292117..1292512 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=838898 VDS58_RS06790 WP_003232954.1 1286953..1287870(+) (amiD) [Bacillus subtilis strain PM0031]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=838898 VDS58_RS06790 WP_003232954.1 1286953..1287870(+) (amiD) [Bacillus subtilis strain PM0031]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATTGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364