Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QPR36_RS12000 Genome accession   NZ_CP126577
Coordinates   2506982..2509330 (-) Length   782 a.a.
NCBI ID   WP_302239903.1    Uniprot ID   -
Organism   Bacillus velezensis strain 411     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2501982..2514330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR36_RS11965 (QPR36_11965) - 2502345..2502683 (-) 339 WP_003152882.1 YqxA family protein -
  QPR36_RS11970 (QPR36_11970) spoIIP 2502700..2503893 (-) 1194 WP_003152880.1 stage II sporulation protein P -
  QPR36_RS11975 (QPR36_11975) gpr 2503961..2505067 (-) 1107 WP_003152878.1 GPR endopeptidase -
  QPR36_RS11980 (QPR36_11980) rpsT 2505270..2505536 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  QPR36_RS11985 (QPR36_11985) holA 2505553..2506594 (-) 1042 Protein_2315 DNA polymerase III subunit delta -
  QPR36_RS11990 (QPR36_11990) - 2506634..2506788 (-) 155 Protein_2316 hypothetical protein -
  QPR36_RS11995 (QPR36_11995) - 2506829..2506963 (+) 135 WP_003152870.1 YqzM family protein -
  QPR36_RS12000 (QPR36_12000) comEC 2506982..2509330 (-) 2349 WP_302239903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPR36_RS12005 (QPR36_12005) - 2509331..2509900 (-) 570 WP_003152868.1 ComE operon protein 2 -
  QPR36_RS12010 (QPR36_12010) comEA 2509967..2510581 (-) 615 WP_015387983.1 helix-hairpin-helix domain-containing protein Machinery gene
  QPR36_RS12015 (QPR36_12015) comER 2510640..2511461 (+) 822 WP_160249252.1 late competence protein ComER -
  QPR36_RS12020 (QPR36_12020) - 2511530..2512267 (-) 738 WP_014305450.1 class I SAM-dependent methyltransferase -
  QPR36_RS12025 (QPR36_12025) rsfS 2512264..2512620 (-) 357 WP_003152864.1 ribosome silencing factor -
  QPR36_RS12030 (QPR36_12030) yqeK 2512617..2513198 (-) 582 WP_003152863.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QPR36_RS12035 (QPR36_12035) - 2513188..2513757 (-) 570 WP_302239909.1 nicotinate-nucleotide adenylyltransferase -
  QPR36_RS12040 (QPR36_12040) yhbY 2513768..2514058 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 86553.52 Da        Isoelectric Point: 9.0078

>NTDB_id=838884 QPR36_RS12000 WP_302239903.1 2506982..2509330(-) (comEC) [Bacillus velezensis strain 411]
MKYKYLLLPLAAVSATAGIAAAHVFWVLLLFLLYLLFIMIKTKQPAPVVVCLVSFCVYFFLYTVCDAANVTRYQAGSYTE
QAVITNIPKVDGAKMSAVIRTHDKEKWAASYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPAHATIPGGFDYKEYLYSQQI
HWLFTVTSIQQCEKSKQPLFKLLSIRKNLISIIRNHVPESSAGIVEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGILLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLVKRGIHSSAALSLSYLLLLLFNPY
LLWQAGFQLSFAVSASLILSSSILKKAGKSRLAGLAMASFIAELSSLPFLLYHFQRISLVSFPMNMVMVPFYTLFVIPVS
VIGFLLLLLSRQMGECLFDMFDLVMKPVHDFITYAASVDLFTMIVLKPDFLSLLLLAVSVFTLFAALEKGGFLKLRKSAL
FFCAVLAYLICRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVIAYPGESWKEKRHPYSIGEKVLIPFLNGKG
VKKLDALILTHADQDHIGEAGVLIKNHRVKRLIVPVGFVKEPKDQNILNMAKENNIPVAEAKRGDTITAGDLQFQVLSPE
SSDGKSKNDSSLVLWTVLGGVSWLLTGDLESDGETEVLKTYPKLKADILKAGHHGSKSSTSEAFLKQLQPEAALISAGKE
NRYHHPHEEVLDRLKAYSVNVLRTDISGTIQYRFEKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=838884 QPR36_RS12000 WP_302239903.1 2506982..2509330(-) (comEC) [Bacillus velezensis strain 411]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACTGCGGGAATTGCCGCCGCTCATGTCTTCTGGGT
TCTGCTCCTTTTTCTTCTGTATCTTCTCTTTATTATGATAAAAACAAAGCAGCCTGCTCCGGTTGTTGTCTGCCTCGTTT
CTTTTTGTGTTTATTTCTTTCTTTATACGGTTTGTGACGCTGCGAATGTAACGCGGTATCAGGCCGGCAGTTATACTGAA
CAGGCCGTCATCACTAATATTCCGAAGGTTGACGGAGCGAAAATGTCAGCCGTTATCCGTACACATGACAAGGAAAAATG
GGCGGCTTCGTACAAAATCCGGTCTCTTGAGGAAAAGAGACTCATTGAACAGCTTGAACCGGGGATGCGCTGCACGTTTA
CAGGCTCTCTGGAACAGCCTGCACATGCGACGATTCCCGGGGGTTTTGATTATAAGGAATATCTTTACTCTCAGCAGATT
CACTGGTTATTTACCGTGACTTCTATTCAGCAGTGTGAAAAATCCAAACAGCCGCTGTTTAAACTGCTGAGCATCAGAAA
AAATTTGATTTCGATCATTCGGAATCACGTGCCTGAATCTTCCGCCGGAATTGTTGAAGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAAGACGATATACTGAGTGCATATCAAAATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGTCTTATTACGGCGGGACTATTTTATGCTCTGATCAGAATCGGGCTGACAAGAGAAAAGGCGGGGATATTGCTGCTGTT
TTTGCCGGTCTATACGCTGCTGAGCGGTGCCGCCCCATCCGTATTGCGCGCATCCCTCATGCTGGGATTTTATATCGCCG
GAACTCTTGTTAAACGCGGCATTCATTCCTCTGCTGCATTGTCTCTGTCTTATCTGCTGCTCCTGCTGTTTAATCCTTAC
CTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCTCTTTAATTCTGTCATCCTCCATTTTAAAGAAAGC
AGGGAAAAGCAGACTTGCCGGGCTTGCGATGGCCTCATTCATCGCAGAGCTCAGCTCACTTCCGTTTCTTCTCTATCATT
TTCAGCGAATTTCACTTGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGGTTTCT
GTCATCGGTTTCCTTCTTCTTTTACTTTCAAGGCAGATGGGAGAATGTTTGTTTGATATGTTTGACCTTGTGATGAAGCC
TGTGCATGATTTCATTACATATGCGGCATCCGTTGATTTATTTACTATGATTGTGTTAAAGCCTGACTTTCTTTCCCTTC
TTCTGCTTGCGGTTTCCGTTTTTACGCTTTTTGCGGCTTTAGAAAAGGGAGGTTTTTTAAAACTCAGGAAATCGGCTCTT
TTTTTCTGCGCGGTTTTGGCTTATTTAATATGCCGTCCGTATTTCAGCCCATGGGGAGAAGCGGATATGCTTGATATCGG
GCAGGGAGACTCGCTGTTTATAAGCGCGCCGCACCGTAAAGGGACCGTAATGGTTGATACAGGGGGAGTGATTGCTTATC
CCGGAGAATCATGGAAAGAAAAACGCCACCCGTATTCTATCGGCGAGAAGGTTTTGATTCCGTTTTTAAACGGAAAAGGG
GTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCACATCGGGGAAGCCGGAGTGTTAATCAAAAATCA
TAGAGTCAAACGGTTAATTGTCCCCGTGGGATTCGTAAAAGAACCGAAGGATCAGAACATATTAAATATGGCGAAAGAAA
ACAACATTCCCGTTGCCGAAGCAAAGCGGGGCGACACCATTACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCGGAG
TCGTCTGACGGAAAGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCGGAGTGAGCTGGCTTTTGACGGG
AGATTTAGAATCGGACGGCGAAACAGAAGTGCTGAAAACGTATCCGAAACTGAAGGCTGATATATTGAAGGCGGGTCATC
ACGGCAGCAAAAGCTCAACGAGTGAAGCCTTTTTGAAACAGCTTCAGCCGGAAGCAGCGCTGATTTCAGCAGGAAAAGAG
AATCGATACCATCATCCGCACGAAGAAGTGCTGGATCGTTTGAAGGCGTACTCTGTCAATGTGCTTCGCACCGATATCAG
CGGAACGATTCAATACAGATTTGAAAAAGGCGCCGGAACGTTTTCCGTCTTCCCTCCATATGATATAGAAGAAACCAGGG
CGCAAGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-171)

Competence protein (Competence)

(208-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(507-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

55.959

98.721

0.552