Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   QPK28_RS17495 Genome accession   NZ_CP126576
Coordinates   3304632..3304772 (-) Length   46 a.a.
NCBI ID   WP_003184860.1    Uniprot ID   P69890
Organism   Bacillus licheniformis strain CQMB003     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299632..3309772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS17470 - 3299930..3300319 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  QPK28_RS17475 - 3300336..3300973 (-) 638 Protein_3390 response regulator transcription factor -
  QPK28_RS17480 comP 3301060..3303366 (-) 2307 WP_119498753.1 ATP-binding protein Regulator
  QPK28_RS17485 comX 3303389..3303553 (-) 165 WP_003184853.1 competence pheromone ComX -
  QPK28_RS17490 - 3303562..3304443 (-) 882 WP_003184856.1 polyprenyl synthetase family protein -
  QPK28_RS17495 degQ 3304632..3304772 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  QPK28_RS17500 - 3305258..3305605 (+) 348 WP_009329512.1 hypothetical protein -
  QPK28_RS17505 - 3305648..3306868 (-) 1221 WP_003184864.1 HDOD domain-containing protein -
  QPK28_RS17510 - 3307047..3308516 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  QPK28_RS17515 - 3308534..3309085 (-) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -
  QPK28_RS17520 - 3309270..3309671 (-) 402 WP_003184870.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5747.56 Da        Isoelectric Point: 8.4596

>NTDB_id=838817 QPK28_RS17495 WP_003184860.1 3304632..3304772(-) (degQ) [Bacillus licheniformis strain CQMB003]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=838817 QPK28_RS17495 WP_003184860.1 3304632..3304772(-) (degQ) [Bacillus licheniformis strain CQMB003]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTACACATATTTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P69890

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

71.429

91.304

0.652