Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QPK28_RS01970 Genome accession   NZ_CP126576
Coordinates   365340..365786 (-) Length   148 a.a.
NCBI ID   WP_003178810.1    Uniprot ID   A0A8B5YEZ5
Organism   Bacillus licheniformis strain CQMB003     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 360340..370786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS01945 - 360950..361825 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  QPK28_RS01950 - 362009..362560 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  QPK28_RS01955 - 362657..363378 (+) 722 Protein_351 AAA family ATPase -
  QPK28_RS01960 - 363449..364885 (+) 1437 WP_003178806.1 family 1 glycosylhydrolase -
  QPK28_RS01965 nin/comJ 364924..365322 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  QPK28_RS01970 nucA/comI 365340..365786 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPK28_RS01975 - 366053..366256 (+) 204 WP_003178812.1 hypothetical protein -
  QPK28_RS01980 - 366262..367065 (+) 804 WP_025805273.1 lipopolysaccharide core heptose(II) kinase RfaY -
  QPK28_RS01985 - 367085..368788 (-) 1704 WP_003178816.1 methyl-accepting chemotaxis protein -
  QPK28_RS01990 - 368904..369644 (-) 741 WP_003178817.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16224.12 Da        Isoelectric Point: 4.9954

>NTDB_id=838766 QPK28_RS01970 WP_003178810.1 365340..365786(-) (nucA/comI) [Bacillus licheniformis strain CQMB003]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=838766 QPK28_RS01970 WP_003178810.1 365340..365786(-) (nucA/comI) [Bacillus licheniformis strain CQMB003]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642