Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QPK28_RS01965 Genome accession   NZ_CP126576
Coordinates   364924..365322 (-) Length   132 a.a.
NCBI ID   WP_003178808.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 359924..370322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS01940 - 360255..360938 (-) 684 WP_003178799.1 amino acid ABC transporter permease -
  QPK28_RS01945 - 360950..361825 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  QPK28_RS01950 - 362009..362560 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  QPK28_RS01955 - 362657..363378 (+) 722 Protein_351 AAA family ATPase -
  QPK28_RS01960 - 363449..364885 (+) 1437 WP_003178806.1 family 1 glycosylhydrolase -
  QPK28_RS01965 nin/comJ 364924..365322 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  QPK28_RS01970 nucA/comI 365340..365786 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPK28_RS01975 - 366053..366256 (+) 204 WP_003178812.1 hypothetical protein -
  QPK28_RS01980 - 366262..367065 (+) 804 WP_025805273.1 lipopolysaccharide core heptose(II) kinase RfaY -
  QPK28_RS01985 - 367085..368788 (-) 1704 WP_003178816.1 methyl-accepting chemotaxis protein -
  QPK28_RS01990 - 368904..369644 (-) 741 WP_003178817.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14990.03 Da        Isoelectric Point: 5.6435

>NTDB_id=838765 QPK28_RS01965 WP_003178808.1 364924..365322(-) (nin/comJ) [Bacillus licheniformis strain CQMB003]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNAQKQVPSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=838765 QPK28_RS01965 WP_003178808.1 364924..365322(-) (nin/comJ) [Bacillus licheniformis strain CQMB003]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGCCCAAAAACAGGTGCCCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTAGAAATTGCAAGCGTCCTATCCAAGAAATTGACATGCGATATTCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485