Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLUL007_RS11415 Genome accession   NZ_CP126569
Coordinates   2191765..2192256 (-) Length   163 a.a.
NCBI ID   WP_014573356.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2186765..2197256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS11415 (LLUL007_11475) comX 2191765..2192256 (-) 492 WP_014573356.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLUL007_RS11420 (LLUL007_11480) ezrA 2192520..2194250 (-) 1731 WP_396425812.1 septation ring formation regulator EzrA -
  LLUL007_RS11425 (LLUL007_11485) tsf 2194455..2195483 (-) 1029 WP_396425813.1 translation elongation factor Ts -
  LLUL007_RS11430 (LLUL007_11490) rpsB 2195605..2196372 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19691.47 Da        Isoelectric Point: 5.7953

>NTDB_id=838755 LLUL007_RS11415 WP_014573356.1 2191765..2192256(-) (comX) [Lactococcus cremoris strain UL007]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMECYWLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=838755 LLUL007_RS11415 WP_014573356.1 2191765..2192256(-) (comX) [Lactococcus cremoris strain UL007]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTTCGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAACCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAATGCTATTGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.16

100

0.982
  comX Lactococcus lactis subsp. lactis strain DGCC12653

74.847

100

0.748