Detailed information    

insolico Bioinformatically predicted

Overview

Name   covS   Type   Regulator
Locus tag   LLUL007_RS04625 Genome accession   NZ_CP126569
Coordinates   889326..890798 (+) Length   490 a.a.
NCBI ID   WP_396426219.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 884326..895798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS04595 (LLUL007_04580) - 884793..885629 (+) 837 WP_011834858.1 metallophosphoesterase -
  LLUL007_RS04600 (LLUL007_04585) - 885722..886633 (+) 912 WP_396426218.1 CHAP domain-containing protein -
  LLUL007_RS04605 (LLUL007_04590) - 886870..887232 (+) 363 WP_011834859.1 TIGR02328 family protein -
  LLUL007_RS04610 (LLUL007_04595) - 887556..887801 (+) 246 WP_011676633.1 type B 50S ribosomal protein L31 -
  LLUL007_RS04615 (LLUL007_04600) - 887934..888464 (+) 531 WP_011834860.1 DUF177 domain-containing protein -
  LLUL007_RS04620 (LLUL007_04605) covR 888621..889313 (+) 693 WP_011676631.1 response regulator transcription factor Regulator
  LLUL007_RS04625 (LLUL007_04610) covS 889326..890798 (+) 1473 WP_396426219.1 ATP-binding protein Regulator
  LLUL007_RS04630 (LLUL007_04615) - 890984..892225 (+) 1242 WP_396426220.1 ammonium transporter -
  LLUL007_RS04635 (LLUL007_04620) - 892307..892648 (+) 342 WP_282670752.1 P-II family nitrogen regulator -
  LLUL007_RS04640 (LLUL007_04625) murD 892817..894166 (+) 1350 WP_011834864.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  LLUL007_RS04645 (LLUL007_04630) murG 894409..895482 (+) 1074 WP_011676626.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 55899.84 Da        Isoelectric Point: 4.7776

>NTDB_id=838729 LLUL007_RS04625 WP_396426219.1 889326..890798(+) (covS) [Lactococcus cremoris strain UL007]
MKKLFTFNKKKETVEESSAKRSIMLRWAFANTVFCFITFTLFATLTYQLTISSFIKEEQRLLTGSMDSVEEVLEQADAPL
NSTNLNTYIEATSKIQNGESEGMSLGSIIGTRKAFYIYDLNHKLLYSTNRHDFGFQKQGNNEMKEIQGENPGYLVQRKIV
SKGTGQVVGYLQAFYDTTTYHRISNLLLVVLLILEIVALIVAQMIGYFMANYFMKPLEKLYQGMQEMASDPTNDFKPIEI
ESGDEIEELAHVYNDMMLKMKAYLEQQNRFVSDVSHELRTPLAVLDGHINLLNRWGKNDPEVLDESLQASLDEVDRMKKM
LEEMLALARLENVDLPSEELDCDVGKVSNHALKNFQLLHEDFEIVLDNQLIYPVHARISENHFEQGLRILLDNAVKYSPD
DRKEIVITVSEDEQFVITSVSDKGIGIAEEDINHLFERFFRADKARNRKIGGTGLGLPILARLAENYQGEIEVSSELGIG
STFTLKFPKM

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=838729 LLUL007_RS04625 WP_396426219.1 889326..890798(+) (covS) [Lactococcus cremoris strain UL007]
ATGAAAAAATTATTCACTTTCAACAAGAAAAAGGAAACGGTAGAAGAAAGTTCGGCTAAGCGGTCTATTATGCTTAGGTG
GGCTTTTGCTAACACCGTTTTTTGTTTTATTACTTTTACTCTTTTTGCAACATTAACTTATCAACTGACCATAAGTTCTT
TCATCAAGGAGGAACAAAGGTTATTGACAGGTTCAATGGACAGCGTTGAAGAGGTATTAGAACAAGCGGATGCTCCTTTA
AATTCAACTAATTTGAATACTTATATTGAAGCGACATCAAAGATTCAAAATGGGGAATCGGAAGGAATGAGTCTGGGAAG
TATCATCGGGACTCGGAAAGCATTTTATATTTATGATTTAAATCATAAATTACTATATTCAACTAATCGACATGATTTTG
GATTTCAAAAGCAAGGCAATAATGAGATGAAAGAAATTCAAGGTGAGAATCCAGGTTATTTAGTCCAAAGGAAGATTGTT
TCTAAAGGGACGGGACAGGTTGTAGGCTATTTACAGGCATTTTATGACACGACAACTTATCATCGGATTTCCAATCTCCT
TTTAGTCGTCTTGTTAATTTTAGAAATTGTCGCTTTAATCGTTGCGCAAATGATTGGTTATTTTATGGCGAATTATTTTA
TGAAGCCTTTAGAAAAACTTTATCAGGGAATGCAGGAAATGGCGAGCGACCCCACGAATGATTTCAAACCTATCGAAATT
GAAAGTGGTGATGAAATTGAAGAATTAGCTCATGTTTATAATGATATGATGCTGAAAATGAAAGCATACCTTGAACAGCA
AAATCGGTTTGTCTCTGATGTTTCACATGAATTAAGGACTCCGTTAGCAGTTTTGGACGGTCATATTAATCTCTTAAATC
GTTGGGGAAAAAATGATCCAGAAGTTTTGGATGAATCTTTGCAGGCGAGTTTGGATGAAGTAGACCGAATGAAGAAAATG
CTTGAAGAAATGCTTGCTTTAGCTAGGCTTGAAAATGTAGATTTGCCCAGTGAAGAATTGGATTGTGACGTTGGGAAAGT
ATCTAATCATGCGCTTAAAAACTTCCAACTTCTACATGAGGATTTTGAGATTGTGCTTGATAATCAGCTTATCTACCCTG
TCCATGCCCGGATATCTGAAAATCATTTTGAACAAGGATTACGCATTTTGTTAGATAATGCTGTTAAGTATTCTCCGGAT
GATCGAAAGGAGATTGTGATTACTGTTTCAGAAGATGAACAGTTTGTCATTACTAGTGTTTCTGATAAAGGAATCGGAAT
TGCCGAAGAAGATATTAATCATCTTTTTGAGCGATTCTTTCGAGCGGATAAGGCACGTAACCGTAAGATTGGCGGAACTG
GTTTAGGTTTACCAATTCTTGCTCGTTTAGCCGAAAATTATCAAGGGGAGATTGAAGTTAGTTCTGAGCTTGGGATTGGT
TCAACTTTTACCTTAAAATTTCCAAAAATGTGA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(208-258)

ArlS sensor domain (ArlS_N)

(54-185)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(380-488)

His Kinase A (phospho-acceptor) domain (HisKA)

(267-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covS Lactococcus lactis subsp. lactis strain DGCC12653

94.286

100

0.943