Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK35_RS04280 Genome accession   NZ_CP126540
Coordinates   930006..930425 (+) Length   139 a.a.
NCBI ID   WP_107386673.1    Uniprot ID   A0A2T4LNY8
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 925006..935425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS04255 (QMK35_04255) - 926408..926812 (+) 405 WP_019468303.1 F0F1 ATP synthase subunit epsilon -
  QMK35_RS04260 (QMK35_04260) - 927228..927461 (+) 234 WP_019468304.1 DUF1146 family protein -
  QMK35_RS04265 (QMK35_04265) murA 927563..928828 (+) 1266 WP_285159876.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QMK35_RS04270 (QMK35_04270) fabZ 928887..929324 (+) 438 WP_046207765.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QMK35_RS04275 (QMK35_04275) - 929376..929816 (-) 441 WP_019468307.1 YwpF-like family protein -
  QMK35_RS04280 (QMK35_04280) ssb 930006..930425 (+) 420 WP_107386673.1 single-stranded DNA-binding protein Machinery gene
  QMK35_RS04285 (QMK35_04285) - 930870..931571 (+) 702 WP_107385184.1 transglycosylase family protein -
  QMK35_RS04290 (QMK35_04290) tenA 932042..932731 (+) 690 WP_107385185.1 thiaminase II -
  QMK35_RS04295 (QMK35_04295) thiD 932724..933545 (+) 822 WP_107385186.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMK35_RS04300 (QMK35_04300) thiM 933538..934317 (+) 780 WP_182467395.1 hydroxyethylthiazole kinase -
  QMK35_RS04305 (QMK35_04305) thiE 934320..934958 (+) 639 WP_285159877.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16043.48 Da        Isoelectric Point: 6.4657

>NTDB_id=838667 QMK35_RS04280 WP_107386673.1 930006..930425(+) (ssb) [Staphylococcus cohnii strain SDAQ-1]
MINSIVIVGRLTKDPKIYDKEGNKLATFCVAVSRNYKDKNQKDICDYLFCKAFGKIANNVEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEVFIETIKFMSPRSKNEDEALFDPLPIVPNQELINKFHLEENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=838667 QMK35_RS04280 WP_107386673.1 930006..930425(+) (ssb) [Staphylococcus cohnii strain SDAQ-1]
ATGATTAACAGTATTGTCATTGTAGGGAGACTAACAAAAGACCCTAAAATTTATGATAAGGAGGGAAATAAACTAGCTAC
ATTTTGCGTAGCTGTTTCAAGAAATTATAAAGATAAAAATCAAAAAGATATTTGTGATTATTTATTCTGTAAAGCATTCG
GAAAAATTGCTAATAATGTCGAAAAATATATCAATCAAGGCTCATTAGTTGGTATAACTGGACAAATGCAATCGAGAAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAGTTTTTATTGAAACTATTAAATTTATGTCCCCACGCTCTAAAAA
TGAAGATGAAGCACTTTTTGACCCACTTCCAATAGTCCCAAATCAAGAACTTATTAATAAATTTCATTTAGAGGAAAACG
ATATTTATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4LNY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

62.595

94.245

0.59
  ssb Staphylococcus aureus MW2

61.832

94.245

0.583