Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QN218_RS16950 Genome accession   NZ_CP126534
Coordinates   3355293..3355742 (+) Length   149 a.a.
NCBI ID   WP_133488530.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3350293..3360742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS16930 hxlR 3351493..3351855 (-) 363 WP_003241118.1 transcriptional activator HxlR -
  QN218_RS16935 hxlA 3352087..3352719 (+) 633 WP_060397902.1 3-hexulose-6-phosphate synthase -
  QN218_RS16940 hxlB 3352725..3353282 (+) 558 WP_003241122.1 6-phospho-3-hexuloisomerase -
  QN218_RS16945 tlpC 3353394..3355118 (+) 1725 WP_060397901.1 methyl-accepting chemotaxis protein TlpC -
  QN218_RS16950 nucA/comI 3355293..3355742 (+) 450 WP_133488530.1 DNA-entry nuclease Machinery gene
  QN218_RS16955 nin/comJ 3355769..3356167 (+) 399 WP_003241129.1 DNA-entry nuclease inhibitor Regulator
  QN218_RS16960 bglC 3356204..3357637 (-) 1434 WP_060397899.1 6-phospho-beta-glucosidase -
  QN218_RS16965 - 3357709..3358437 (-) 729 WP_060397898.1 AAA family ATPase -
  QN218_RS16970 - 3358457..3358798 (-) 342 WP_060397897.1 DUF3147 family protein -
  QN218_RS16975 - 3358792..3359208 (-) 417 WP_104010211.1 MarR family transcriptional regulator -
  QN218_RS16980 - 3359325..3359657 (-) 333 WP_060397895.1 YckD family protein -
  QN218_RS16985 - 3359740..3360195 (-) 456 WP_060397894.1 RDD family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.44 Da        Isoelectric Point: 4.4943

>NTDB_id=838587 QN218_RS16950 WP_133488530.1 3355293..3355742(+) (nucA/comI) [Bacillus inaquosorum strain BSY82]
MNITMDIIKTILLVIVVIAAAAVSLIKGDFFSADQKTSQTKQYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=838587 QN218_RS16950 WP_133488530.1 3355293..3355742(+) (nucA/comI) [Bacillus inaquosorum strain BSY82]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCAGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAACAATATGACGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCAAAACATATAAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGTACCATCGACAGGGACGGAGCT
GAGGAACGCCGTGAGCAATCATTAAAAGACGTACCGCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGTTCTTGGGTCGGGCATC
AGCTTACCGATTACCCTGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94