Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VLB48_RS01950 Genome accession   NZ_CP141863
Coordinates   418266..418733 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain numer 3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413266..423733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLB48_RS01925 rpsG 413407..413877 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  VLB48_RS01930 fusA 413974..416088 (+) 2115 WP_000124700.1 elongation factor G -
  VLB48_RS01935 tuf 416159..417343 (+) 1185 WP_000031783.1 elongation factor Tu -
  VLB48_RS01940 bfd 417526..417720 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  VLB48_RS01945 bfr 417793..418269 (+) 477 WP_000675515.1 bacterioferritin -
  VLB48_RS01950 pilD 418266..418733 (-) 468 WP_000340167.1 prepilin peptidase Machinery gene
  VLB48_RS01955 rpsJ 419112..419423 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  VLB48_RS01960 rplC 419456..420085 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  VLB48_RS01965 rplD 420096..420701 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  VLB48_RS01970 rplW 420698..421000 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  VLB48_RS01975 rplB 421018..421839 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  VLB48_RS01980 rpsS 421856..422134 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  VLB48_RS01985 rplV 422149..422481 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  VLB48_RS01990 rpsC 422499..423200 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  VLB48_RS01995 rplP 423213..423623 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=838588 VLB48_RS01950 WP_000340167.1 418266..418733(-) (pilD) [Escherichia coli strain numer 3]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=838588 VLB48_RS01950 WP_000340167.1 418266..418733(-) (pilD) [Escherichia coli strain numer 3]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361