Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QN218_RS12575 Genome accession   NZ_CP126534
Coordinates   2405635..2406588 (-) Length   317 a.a.
NCBI ID   WP_019258048.1    Uniprot ID   A0A9Q4EVQ8
Organism   Bacillus inaquosorum strain BSY82     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2400635..2411588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS12545 appD 2400769..2401755 (-) 987 WP_060398372.1 oligopeptide ABC transporter ATP-binding protein AppD -
  QN218_RS12550 - 2401944..2402729 (-) 786 WP_060398371.1 DUF2268 domain-containing protein -
  QN218_RS12555 fabF 2402806..2404047 (-) 1242 WP_060398370.1 beta-ketoacyl-ACP synthase II -
  QN218_RS12560 fabH 2404070..2405008 (-) 939 WP_060398369.1 beta-ketoacyl-ACP synthase III -
  QN218_RS12565 - 2405172..2405399 (+) 228 WP_080010764.1 hypothetical protein -
  QN218_RS12570 comZ 2405429..2405620 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QN218_RS12575 med 2405635..2406588 (-) 954 WP_019258048.1 transcriptional regulator Med Regulator
  QN218_RS12580 - 2406679..2407236 (-) 558 WP_060398368.1 hypothetical protein -
  QN218_RS12585 - 2407318..2408052 (-) 735 WP_003239317.1 hypothetical protein -
  QN218_RS12590 - 2408304..2408489 (+) 186 WP_003224551.1 YjzD family protein -
  QN218_RS12595 - 2408535..2408714 (-) 180 WP_003239319.1 YjzC family protein -
  QN218_RS12600 argF 2408816..2409760 (-) 945 WP_060398367.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35313.80 Da        Isoelectric Point: 4.5558

>NTDB_id=838573 QN218_RS12575 WP_019258048.1 2405635..2406588(-) (med) [Bacillus inaquosorum strain BSY82]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAEAKGDNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDSTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=838573 QN218_RS12575 WP_019258048.1 2405635..2406588(-) (med) [Bacillus inaquosorum strain BSY82]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGCGGGGCGTTAACCTTCTCTATGGCCATGGAAGTGAATATGCAGAGGTATTTAACTTGGTCAGCGAAGATTA
TCCAGATATGGAATTTGTCATTTCTAATGCGGAAGCGAAAGGTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGCTTTTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAG
CCAGAGGTTGACGGTTTTATCAAAGGTGCCAAATATGAAAACCCTGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATTCGACAGCAGTGAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGCTATGTCACAGATCAATCAGATCTC
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGAGATCATTACTACGACCTGAAAACGGGAGTTGTTGAAATGGGAACATTCAGTCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

97.792

100

0.978