Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QN218_RS06300 Genome accession   NZ_CP126534
Coordinates   1200689..1201024 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain BSY82     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195689..1206024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS06250 comGC 1195705..1196001 (+) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  QN218_RS06255 comGD 1195991..1196422 (+) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  QN218_RS06260 comGE 1196406..1196750 (+) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  QN218_RS06265 comGF 1196776..1197159 (+) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  QN218_RS06270 comGG 1197160..1197534 (+) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  QN218_RS06275 - 1197605..1197784 (+) 180 WP_003236949.1 YqzE family protein -
  QN218_RS06280 - 1197826..1198152 (-) 327 WP_029316858.1 YqzG/YhdC family protein -
  QN218_RS06285 tapA 1198425..1199189 (+) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  QN218_RS06290 - 1199173..1199745 (+) 573 WP_080429111.1 signal peptidase I -
  QN218_RS06295 tasA 1199809..1200594 (+) 786 WP_003236939.1 biofilm matrix protein TasA -
  QN218_RS06300 sinR 1200689..1201024 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QN218_RS06305 sinI 1201058..1201231 (-) 174 WP_003226347.1 anti-repressor SinI family protein Regulator
  QN218_RS06310 - 1201416..1202210 (-) 795 WP_003236936.1 YqhG family protein -
  QN218_RS06315 - 1202231..1203904 (-) 1674 WP_060399012.1 SNF2-related protein -
  QN218_RS06320 gcvT 1204348..1205436 (+) 1089 WP_060399011.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=838554 QN218_RS06300 WP_003226345.1 1200689..1201024(-) (sinR) [Bacillus inaquosorum strain BSY82]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=838554 QN218_RS06300 WP_003226345.1 1200689..1201024(-) (sinR) [Bacillus inaquosorum strain BSY82]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1