Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QN218_RS00450 Genome accession   NZ_CP126534
Coordinates   99168..100550 (+) Length   460 a.a.
NCBI ID   WP_080429123.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 94168..105550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS00430 - 95317..95970 (-) 654 WP_060399600.1 YigZ family protein -
  QN218_RS00435 degS 96188..97345 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  QN218_RS00440 degU 97428..98117 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QN218_RS00445 - 98215..99060 (+) 846 WP_060399599.1 DegV family protein -
  QN218_RS00450 comFA 99168..100550 (+) 1383 WP_080429123.1 ATP-dependent helicase ComFA Machinery gene
  QN218_RS00455 comFB 100618..100914 (+) 297 WP_003235460.1 late competence protein ComFB -
  QN218_RS00460 comFC 100878..101600 (+) 723 WP_060399597.1 ComF family protein Machinery gene
  QN218_RS00465 - 101673..102092 (+) 420 WP_060399596.1 TIGR03826 family flagellar region protein -
  QN218_RS00470 flgM 102172..102438 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QN218_RS00475 flgN 102454..102936 (+) 483 WP_060399595.1 flagellar protein FlgN -
  QN218_RS00480 flgK 102955..104472 (+) 1518 WP_060399594.1 flagellar hook-associated protein FlgK -
  QN218_RS00485 flgL 104482..105378 (+) 897 WP_060399593.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52170.17 Da        Isoelectric Point: 9.8788

>NTDB_id=838527 QN218_RS00450 WP_080429123.1 99168..100550(+) (comFA) [Bacillus inaquosorum strain BSY82]
MIVPAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNGYIAAQNSISINKRGYRCNRCGQNDQRYFSFYHSSGKN
QLYCRSCVMMGRVSEDVPLYSWIEEDEPNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGNWKKKLNRNKVPLAVKR
WIAFHVKEGRPVFLFVPSVSVMEKAASCFKDVNCRTAFVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNDLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=838527 QN218_RS00450 WP_080429123.1 99168..100550(+) (comFA) [Bacillus inaquosorum strain BSY82]
CTGATTGTGCCAGCTGAAAAGAACATTTCTTTCTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCAGTTGCTCAGAAC
TGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGGCTATATCGCCGCTCAAAACTCTATATCCATAA
ATAAACGGGGGTATAGATGTAATAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTTTTATCATTCATCTGGAAAGAAT
CAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGATGA
ACCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AGGCCATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGTGCTGGCAAAACAGAGATGCTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGACTGCGTGTTTGTATTGCGACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTATGGAGGAAGCGAGGACAAAGGGCGGTTATCTCCGCTTATGA
TTTCCACAACACATCAGCTTTTGCGATATAAAGACGCATTTGACGTTATGATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACTTAAGTGCAACACC
CCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGCTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAACCTT
TGCCAGAACCGCGCTTTGTATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAACAAAGTTCCGTTAGCTGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTATGGAAAAGGCAGCTTC
CTGCTTTAAAGATGTCAATTGCCGAACAGCGTTTGTGCATGCGGAAGATAAGCACAGAAAAGAAAAAGTACAGCAGTTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCCCAAGGTGCAGACAGGTGTA
TTAGGTGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGTCATAAAGAGCATGC
GGATGGTGATGTCATTTTCTTTCACTACGGAAAAACTAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
ACTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

91.522

100

0.915