Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QN218_RS00440 Genome accession   NZ_CP126534
Coordinates   97428..98117 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain BSY82     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 92428..103117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS00420 - 93012..94088 (+) 1077 WP_060399602.1 MraY family glycosyltransferase -
  QN218_RS00425 - 94160..95317 (-) 1158 WP_060399601.1 LCP family protein -
  QN218_RS00430 - 95317..95970 (-) 654 WP_060399600.1 YigZ family protein -
  QN218_RS00435 degS 96188..97345 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  QN218_RS00440 degU 97428..98117 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QN218_RS00445 - 98215..99060 (+) 846 WP_060399599.1 DegV family protein -
  QN218_RS00450 comFA 99168..100550 (+) 1383 WP_080429123.1 ATP-dependent helicase ComFA Machinery gene
  QN218_RS00455 comFB 100618..100914 (+) 297 WP_003235460.1 late competence protein ComFB -
  QN218_RS00460 comFC 100878..101600 (+) 723 WP_060399597.1 ComF family protein Machinery gene
  QN218_RS00465 - 101673..102092 (+) 420 WP_060399596.1 TIGR03826 family flagellar region protein -
  QN218_RS00470 flgM 102172..102438 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QN218_RS00475 flgN 102454..102936 (+) 483 WP_060399595.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=838526 QN218_RS00440 WP_003219701.1 97428..98117(+) (degU) [Bacillus inaquosorum strain BSY82]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838526 QN218_RS00440 WP_003219701.1 97428..98117(+) (degU) [Bacillus inaquosorum strain BSY82]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGCATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGTGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCCGCACATCCTCAGCATGAGGTTTACCCTGAGATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATTAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1