Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QPL78_RS13175 Genome accession   NZ_CP126530
Coordinates   2559405..2561735 (-) Length   776 a.a.
NCBI ID   WP_284560780.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554405..2566735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS13140 (QPL78_13140) - 2554745..2555083 (-) 339 WP_105953578.1 YqxA family protein -
  QPL78_RS13145 (QPL78_13145) spoIIP 2555100..2556305 (-) 1206 WP_095713315.1 spore autolysin SpoIIP -
  QPL78_RS13150 (QPL78_13150) gpr 2556368..2557474 (-) 1107 WP_044154490.1 GPR endopeptidase -
  QPL78_RS13155 (QPL78_13155) rpsT 2557678..2557944 (+) 267 WP_010335003.1 30S ribosomal protein S20 -
  QPL78_RS13160 (QPL78_13160) holA 2557959..2559002 (-) 1044 WP_101864552.1 DNA polymerase III subunit delta -
  QPL78_RS13165 (QPL78_13165) - 2559042..2559191 (-) 150 WP_142367341.1 hypothetical protein -
  QPL78_RS13170 (QPL78_13170) - 2559232..2559366 (+) 135 WP_010335005.1 YqzM family protein -
  QPL78_RS13175 (QPL78_13175) comEC 2559405..2561735 (-) 2331 WP_284560780.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPL78_RS13180 (QPL78_13180) - 2561739..2562308 (-) 570 WP_010335007.1 ComE operon protein 2 -
  QPL78_RS13185 (QPL78_13185) comEA 2562375..2562992 (-) 618 WP_284559337.1 helix-hairpin-helix domain-containing protein Machinery gene
  QPL78_RS13190 (QPL78_13190) comER 2563076..2563897 (+) 822 WP_284559338.1 late competence protein ComER -
  QPL78_RS13195 (QPL78_13195) - 2563962..2564705 (-) 744 WP_284559339.1 class I SAM-dependent methyltransferase -
  QPL78_RS13200 (QPL78_13200) rsfS 2564702..2565058 (-) 357 WP_024122115.1 ribosome silencing factor -
  QPL78_RS13205 (QPL78_13205) yqeK 2565076..2565636 (-) 561 WP_024122116.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QPL78_RS13210 (QPL78_13210) - 2565626..2566195 (-) 570 WP_010335014.1 nicotinate-nucleotide adenylyltransferase -
  QPL78_RS13215 (QPL78_13215) yhbY 2566206..2566496 (-) 291 WP_024122118.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 86226.48 Da        Isoelectric Point: 8.2238

>NTDB_id=838497 QPL78_RS13175 WP_284560780.1 2559405..2561735(-) (comEC) [Bacillus halotolerans strain Tehuacan_S4]
MRNSRLLLPLAAASATAGIAAASYFSAVFLFFLFLLIVSIKTRHAPLIFVCLFSFVLNFALFKITDSQNTSSYQQGSYYF
KAVIHSIPKIDGDRMSMLIKTPDGEKWAASYRIQSLAEKDKLSHLEPGMACELTGTLEKPKQATVPGTFDYQQYLYRQHI
HWSYSVTSIGNCSEPSGVRYKLLGLRKYIVSFTNTHLPPDSAGIVQALTVGERSYLDDEVLNAYQNLGVVHLLAISGLHI
GILTAGLFYAMIRLGITRENASILLLLFLPIYVILTGAAPSVLRAALMSGIYLAGSLFQQRVNSAGVICLSYIVLLLFNP
YYLFEAGFQLSFAVSFSLILSSSIFQHSKTGLGQLTIVSVIAQLGSLPILLYHFQQFSIISIPMNMVLVPFYTFCILPAA
IIGVILLFFSASVGQFLFYWFDVMMTWTNRLITKIADIEIFTIIISRPAPALLLLFTLTVIILLMSIEKPSFLRLTVSTG
LFCATLILLFVFPYVSSEGEVDMIDIGQGDSMFVSAPYQKGRVLIDTGGTLSYSSEPWREKQHPFSLGEKVLIPFLTAKG
IKQLDALILTHADQDHIGEAEVLLKHHKVKRLIIPKGFVSESHDEKVLRTARQEGVAIEEVKRGDVLQIKDLQFHVLSPE
TPDPASKNNSSLVLWMKTGRLSWLLTGDLEKEGEQEVINVFPNIKADVLKVGHHGSKGSTGEEFIKQLQPKTAVISAGEN
NRYHHPHQEVLQLLKSRSIRVLRTDQSGTIQYTYKSGPGTFSVYPPYDTSDMTEAN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=838497 QPL78_RS13175 WP_284560780.1 2559405..2561735(-) (comEC) [Bacillus halotolerans strain Tehuacan_S4]
ATGCGGAATTCGCGTCTATTATTGCCTTTGGCGGCAGCTTCAGCAACGGCTGGAATTGCTGCCGCCTCTTATTTCTCCGC
TGTCTTTCTCTTCTTCCTCTTTCTTCTTATTGTGTCAATCAAAACAAGGCACGCTCCACTCATTTTTGTTTGTTTATTCT
CTTTTGTACTCAATTTTGCCCTGTTTAAGATCACAGATTCTCAAAATACTTCTTCGTATCAGCAGGGCAGCTATTACTTC
AAGGCGGTTATTCATAGTATTCCTAAAATTGACGGGGATCGGATGTCTATGCTGATCAAGACGCCCGATGGCGAAAAATG
GGCTGCCTCTTATCGGATTCAGTCTTTAGCTGAAAAAGACAAACTGTCACATCTAGAGCCGGGTATGGCATGCGAATTGA
CTGGTACTTTGGAGAAGCCAAAACAAGCAACAGTGCCGGGAACATTTGATTATCAACAGTATCTTTACCGGCAGCATATT
CATTGGAGCTATTCTGTCACATCTATTGGAAATTGCAGCGAGCCTTCAGGTGTCCGGTATAAGCTTCTCGGTTTGAGAAA
ATACATCGTATCATTCACGAACACACATCTTCCGCCAGATTCAGCAGGAATCGTACAGGCGCTTACAGTAGGTGAAAGAT
CTTATTTGGATGACGAAGTGCTTAATGCTTACCAAAATCTAGGTGTTGTCCATCTGTTAGCCATCTCAGGACTCCATATC
GGGATTTTGACAGCAGGCCTATTTTACGCAATGATCCGTCTGGGCATAACAAGAGAAAATGCTTCAATCCTATTGCTTTT
GTTTCTGCCGATCTATGTTATTTTGACAGGCGCAGCGCCTTCTGTTCTCCGAGCTGCTCTGATGTCGGGCATCTACTTAG
CGGGAAGCCTTTTTCAGCAGCGGGTAAATTCTGCCGGGGTAATCTGTCTTTCGTATATCGTCCTCTTGCTTTTTAATCCC
TACTACCTTTTTGAAGCTGGATTTCAGCTTTCATTTGCGGTCAGTTTCTCTTTAATTCTTTCATCATCTATTTTTCAGCA
TAGCAAAACGGGTCTGGGACAGCTGACGATTGTATCTGTTATTGCCCAGCTAGGCTCACTACCCATTCTTCTGTATCATT
TTCAGCAGTTTTCTATCATTAGCATTCCGATGAATATGGTGTTGGTGCCTTTTTATACATTCTGTATTTTACCGGCTGCT
ATTATAGGAGTTATTCTATTATTTTTTTCAGCGTCCGTCGGTCAATTTCTGTTCTATTGGTTTGATGTAATGATGACCTG
GACCAACAGACTGATCACTAAAATCGCTGATATAGAAATATTCACAATCATCATCTCTCGCCCTGCACCTGCTCTTCTTC
TCTTATTCACGCTCACTGTCATCATATTGCTTATGAGTATTGAGAAACCCTCATTTCTCCGGCTGACAGTGTCCACAGGC
CTTTTTTGTGCAACACTTATCCTGCTCTTTGTTTTCCCTTATGTTAGTTCCGAGGGAGAAGTAGATATGATTGATATCGG
ACAAGGTGACAGTATGTTTGTCAGTGCACCGTATCAGAAAGGCCGTGTTTTAATTGATACGGGAGGCACTTTGTCTTATT
CGTCAGAGCCTTGGCGGGAAAAACAGCATCCTTTTTCACTGGGGGAAAAGGTGCTGATCCCTTTTTTAACGGCAAAGGGC
ATCAAGCAGCTTGATGCGCTGATACTGACGCACGCAGATCAAGATCATATCGGAGAGGCAGAGGTTTTGCTGAAGCATCA
TAAAGTGAAGCGTCTCATCATTCCGAAAGGGTTTGTTTCTGAATCTCATGATGAGAAAGTGCTGCGGACTGCCAGACAGG
AGGGTGTGGCAATTGAAGAGGTGAAGCGGGGTGATGTATTGCAAATAAAGGACTTACAGTTTCATGTGCTGTCACCGGAA
ACGCCTGATCCGGCAAGTAAAAATAATTCTTCTCTCGTTCTATGGATGAAAACAGGCAGGCTCAGCTGGCTCCTGACGGG
TGATCTGGAAAAAGAGGGGGAACAGGAGGTTATCAATGTGTTCCCGAATATAAAAGCGGATGTGTTAAAGGTGGGGCATC
ATGGAAGCAAGGGCTCGACCGGTGAAGAATTCATCAAACAGCTTCAGCCCAAAACGGCGGTCATCTCAGCGGGTGAAAAC
AATAGGTACCATCATCCGCATCAAGAAGTTCTTCAATTGTTAAAGAGCCGATCCATTCGTGTGCTGCGCACTGATCAAAG
CGGCACGATCCAATACACGTACAAAAGCGGACCTGGAACCTTTTCTGTTTATCCTCCATATGATACATCAGATATGACAG
AGGCGAATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-469)

Domain of unknown function (DUF4131) (DUF4131)

(25-169)

Metallo-beta-lactamase superfamily (Lactamase_B)

(507-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

79.639

100

0.796