Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QPL78_RS12675 Genome accession   NZ_CP126530
Coordinates   2473798..2474133 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2468798..2479133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS12655 (QPL78_12655) gcvT 2469388..2470476 (-) 1089 WP_101864522.1 glycine cleavage system aminomethyltransferase GcvT -
  QPL78_RS12660 (QPL78_12660) - 2470920..2472593 (+) 1674 WP_101864657.1 SNF2-related protein -
  QPL78_RS12665 (QPL78_12665) - 2472613..2473407 (+) 795 WP_101864523.1 YqhG family protein -
  QPL78_RS12670 (QPL78_12670) sinI 2473591..2473764 (+) 174 WP_024122036.1 anti-repressor SinI family protein Regulator
  QPL78_RS12675 (QPL78_12675) sinR 2473798..2474133 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QPL78_RS12680 (QPL78_12680) tasA 2474220..2475005 (-) 786 WP_101864524.1 biofilm matrix protein TasA -
  QPL78_RS12685 (QPL78_12685) - 2475070..2475654 (-) 585 WP_284559282.1 signal peptidase I -
  QPL78_RS12690 (QPL78_12690) tapA 2475626..2476387 (-) 762 WP_284559283.1 amyloid fiber anchoring/assembly protein TapA -
  QPL78_RS12695 (QPL78_12695) - 2476664..2476987 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  QPL78_RS12700 (QPL78_12700) - 2477030..2477209 (-) 180 WP_003236949.1 YqzE family protein -
  QPL78_RS12705 (QPL78_12705) comGG 2477281..2477655 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  QPL78_RS12710 (QPL78_12710) comGF 2477656..2478039 (-) 384 WP_284559284.1 competence type IV pilus minor pilin ComGF Machinery gene
  QPL78_RS12715 (QPL78_12715) comGE 2478065..2478412 (-) 348 WP_284559285.1 competence type IV pilus minor pilin ComGE Machinery gene
  QPL78_RS12720 (QPL78_12720) comGD 2478396..2478827 (-) 432 WP_255003480.1 competence type IV pilus minor pilin ComGD Machinery gene
  QPL78_RS12725 (QPL78_12725) comGC 2478817..2479113 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=838488 QPL78_RS12675 WP_003226345.1 2473798..2474133(+) (sinR) [Bacillus halotolerans strain Tehuacan_S4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=838488 QPL78_RS12675 WP_003226345.1 2473798..2474133(+) (sinR) [Bacillus halotolerans strain Tehuacan_S4]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1