Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QPL78_RS12490 Genome accession   NZ_CP126530
Coordinates   2441690..2443420 (-) Length   576 a.a.
NCBI ID   WP_101861022.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2436690..2448420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS12470 (QPL78_12470) - 2437253..2437387 (+) 135 WP_024122000.1 hypothetical protein -
  QPL78_RS12475 (QPL78_12475) - 2437460..2438578 (+) 1119 WP_284559271.1 NADH-dependent flavin oxidoreductase -
  QPL78_RS12480 (QPL78_12480) spo0A 2439159..2439962 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  QPL78_RS12485 (QPL78_12485) spoIVB 2440238..2441515 (-) 1278 WP_284559272.1 SpoIVB peptidase -
  QPL78_RS12490 (QPL78_12490) recN 2441690..2443420 (-) 1731 WP_101861022.1 DNA repair protein RecN Machinery gene
  QPL78_RS12495 (QPL78_12495) argR 2443456..2443905 (-) 450 WP_010334883.1 arginine repressor ArgR -
  QPL78_RS12500 (QPL78_12500) - 2444002..2444847 (-) 846 WP_284559273.1 TlyA family RNA methyltransferase -
  QPL78_RS12505 (QPL78_12505) dxs 2444844..2446745 (-) 1902 WP_284559274.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QPL78_RS12510 (QPL78_12510) - 2446923..2447813 (-) 891 WP_106020083.1 polyprenyl synthetase family protein -
  QPL78_RS12515 (QPL78_12515) - 2447803..2448057 (-) 255 WP_284559275.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64732.46 Da        Isoelectric Point: 4.6556

>NTDB_id=838486 QPL78_RS12490 WP_101861022.1 2441690..2443420(-) (recN) [Bacillus halotolerans strain Tehuacan_S4]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRDEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=838486 QPL78_RS12490 WP_101861022.1 2441690..2443420(-) (recN) [Bacillus halotolerans strain Tehuacan_S4]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTCGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCAAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCCGAGCGCTTGAATTTTATTGAGACGCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTATCCCGAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACGGCGACCCGCGATGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGGGTCGAAGTCACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958