Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QPL78_RS12480 Genome accession   NZ_CP126530
Coordinates   2439159..2439962 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434159..2444962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS12455 (QPL78_12455) - 2435158..2435901 (-) 744 WP_284559269.1 glycerophosphodiester phosphodiesterase -
  QPL78_RS12460 (QPL78_12460) - 2435991..2436611 (-) 621 WP_284559270.1 N-acetylmuramoyl-L-alanine amidase -
  QPL78_RS12465 (QPL78_12465) - 2436634..2436924 (-) 291 WP_024121999.1 hypothetical protein -
  QPL78_RS12470 (QPL78_12470) - 2437253..2437387 (+) 135 WP_024122000.1 hypothetical protein -
  QPL78_RS12475 (QPL78_12475) - 2437460..2438578 (+) 1119 WP_284559271.1 NADH-dependent flavin oxidoreductase -
  QPL78_RS12480 (QPL78_12480) spo0A 2439159..2439962 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  QPL78_RS12485 (QPL78_12485) spoIVB 2440238..2441515 (-) 1278 WP_284559272.1 SpoIVB peptidase -
  QPL78_RS12490 (QPL78_12490) recN 2441690..2443420 (-) 1731 WP_101861022.1 DNA repair protein RecN Machinery gene
  QPL78_RS12495 (QPL78_12495) argR 2443456..2443905 (-) 450 WP_010334883.1 arginine repressor ArgR -
  QPL78_RS12500 (QPL78_12500) - 2444002..2444847 (-) 846 WP_284559273.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=838485 QPL78_RS12480 WP_010334880.1 2439159..2439962(-) (spo0A) [Bacillus halotolerans strain Tehuacan_S4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=838485 QPL78_RS12480 WP_010334880.1 2439159..2439962(-) (spo0A) [Bacillus halotolerans strain Tehuacan_S4]
GTGGAGAAAATTAAAGTTTGTGTTGCCGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCGGATGTGCTCG
TCTTGGATATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGACAT
CGAACTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGCTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCGGATAAGCTAAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996