Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QPL84_RS20610 Genome accession   NZ_CP126525
Coordinates   4035571..4037310 (-) Length   579 a.a.
NCBI ID   WP_000947741.1    Uniprot ID   A0A2B7E0N6
Organism   Bacillus toyonensis strain Puebla_S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4030571..4042310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS20590 (QPL84_20590) - 4030839..4031138 (-) 300 WP_284558161.1 hypothetical protein -
  QPL84_RS20595 (QPL84_20595) - 4031943..4032917 (-) 975 WP_284558162.1 tyrosine-type recombinase/integrase -
  QPL84_RS20600 (QPL84_20600) spo0A 4033071..4033865 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  QPL84_RS20605 (QPL84_20605) spoIVB 4034154..4035452 (-) 1299 WP_284558163.1 SpoIVB peptidase -
  QPL84_RS20610 (QPL84_20610) recN 4035571..4037310 (-) 1740 WP_000947741.1 DNA repair protein RecN Machinery gene
  QPL84_RS20615 (QPL84_20615) argR 4037572..4038021 (-) 450 WP_001032581.1 arginine repressor ArgR -
  QPL84_RS20620 (QPL84_20620) - 4038164..4039006 (-) 843 WP_001274740.1 TlyA family RNA methyltransferase -
  QPL84_RS20625 (QPL84_20625) dxs 4039010..4040902 (-) 1893 WP_000366442.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QPL84_RS20630 (QPL84_20630) ispA 4041204..4042094 (-) 891 WP_000150368.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65821.87 Da        Isoelectric Point: 4.7945

>NTDB_id=838428 QPL84_RS20610 WP_000947741.1 4035571..4037310(-) (recN) [Bacillus toyonensis strain Puebla_S2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQTVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLRENLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGIASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=838428 QPL84_RS20610 WP_000947741.1 4035571..4037310(-) (recN) [Bacillus toyonensis strain Puebla_S2]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGTTATTTTATGTGGAAGACGACAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATTGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTTGTCACCCTTAGTATATTAAAAGAGATTGGCAAAACGCTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGACATCTGTTTATGCTCGATCATTTTGATGGGGAGCGTATTGTTAAACAGTTG
GATATATATCAAACTGTTTACGCTGACTATGAGAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTTAGAGAAAATCTCGATATGATGG
AATATGATCCGAATCGTCTAGATGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAGCAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCAGAAGAACCTCTTGTGGAAGGCGCACCGGTGCGCCTTACGGCGGACGGCTATGATCACGTGGA
GTTTTATATTTCAACGAATCCCGGTGAACCGTTAAAACCACTTTCAAAGGTCGCTTCAGGTGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAACATCAAGGTATTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAGGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B7E0N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598