Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   VDS57_RS19300 Genome accession   NZ_CP141839
Coordinates   3640645..3642528 (+) Length   627 a.a.
NCBI ID   WP_041516431.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3635645..3647528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS19285 (VDS57_19285) ymcA 3636682..3637113 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  VDS57_RS19290 (VDS57_19290) cotE 3637375..3637920 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  VDS57_RS19295 (VDS57_19295) hexA 3638053..3640629 (+) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  VDS57_RS19300 (VDS57_19300) hexB 3640645..3642528 (+) 1884 WP_041516431.1 DNA mismatch repair endonuclease MutL Machinery gene
  VDS57_RS19305 (VDS57_19305) - 3642901..3643047 (+) 147 WP_014479823.1 XtrA/YqaO family protein -
  VDS57_RS19310 (VDS57_19310) - 3643090..3643341 (+) 252 Protein_3742 VWA domain-containing protein -
  VDS57_RS19315 (VDS57_19315) - 3643638..3643886 (+) 249 WP_031600520.1 hypothetical protein -
  VDS57_RS19320 (VDS57_19320) - 3643937..3644299 (-) 363 WP_033881685.1 Ig-like domain-containing protein -
  VDS57_RS19325 (VDS57_19325) - 3644572..3645321 (+) 750 WP_014479826.1 hypothetical protein -
  VDS57_RS19330 (VDS57_19330) - 3645558..3645968 (+) 411 WP_031600522.1 ArpU family phage packaging/lysis transcriptional regulator -
  VDS57_RS19335 (VDS57_19335) - 3645968..3646497 (+) 530 Protein_3747 tyrosine-type recombinase/integrase -
  VDS57_RS19340 (VDS57_19340) - 3646767..3646919 (+) 153 WP_162175547.1 hypothetical protein -
  VDS57_RS19345 (VDS57_19345) - 3647247..3647396 (+) 150 WP_031600526.1 hypothetical protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 70572.47 Da        Isoelectric Point: 5.6795

>NTDB_id=838407 VDS57_RS19300 WP_041516431.1 3640645..3642528(+) (hexB) [Bacillus subtilis strain PN1236]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGEGMENEDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEITTSTGEGAGTKLVLQGGNIISESRSSSRKGTEIVVSNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHHGKNLLQTNGNGDVRHVLAAIYGTAVAKKMLPLHASSLDFEVKGYIALPE
ITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHDLIRDG
IKDVFKQQQLIPSAQLPKKSAPVIKNEQQFITFDEKPPERKVPEKAHAPSYSPMKLSSVVKEPIDAEEELPPLQFDAPSI
VDQEQTLEVSDVSEELPETFEQECHEEQQQPASERVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVG
EVEPEVQDMIVPLTFHYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDI
KKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=838407 VDS57_RS19300 WP_041516431.1 3640645..3642528(+) (hexB) [Bacillus subtilis strain PN1236]
GTGGCAAAAGTCATCCAGCTGTCAGATGAGCTTTCAAATAAAATAGCGGCGGGCGAGGTTGTGGAACGGCCCGCCTCAGT
CGTCAAAGAATTGGTGGAAAATGCGATCGACGCTGACAGCACAGTCATTGAAATCGATATTGAGGAAGCAGGCCTTGCAT
CCATTCGGGTCTTGGATAACGGCGAAGGAATGGAGAATGAAGATTGCAAGCGAGCTTTCCGCCGCCACGCAACGAGTAAA
ATAAAAGATGAAAATGATTTATTCAGGGTGAGAACGCTCGGTTTCAGGGGAGAAGCCCTGCCGAGTATCGCGTCAGTCTC
TCATCTGGAGATTACAACAAGCACTGGTGAAGGAGCTGGGACGAAGCTCGTCCTCCAAGGAGGAAACATCATTTCCGAAT
CGCGTTCCTCAAGCAGGAAGGGAACTGAAATTGTCGTTTCCAACCTGTTTTTTAACACACCGGCCCGTTTGAAATATATG
AAAACCGTTCATACAGAGCTTGGAAACATTACAGACGTGGTTAACCGTATTGCTCTGGCGCATCCAGAGGTATCGATCCG
CCTGCGACATCATGGGAAAAACCTGCTTCAAACGAACGGAAACGGAGATGTGCGCCATGTACTGGCAGCGATTTACGGCA
CGGCTGTCGCCAAAAAAATGCTTCCGCTGCATGCGAGCTCCTTGGATTTTGAAGTAAAGGGATATATCGCCCTCCCAGAG
ATTACACGGGCGTCGAGAAACTATATGTCGTCTGTGGTCAATGGCCGTTACATTAAAAATTTCCCGCTCGTCAAAGCGGT
TCATGAAGGCTATCATACGCTTCTGCCGATCGGACGCCATCCGATTACTTTTATAGAAATTACGATGGACCCGATTTTAG
TCGATGTCAATGTGCATCCATCGAAGCTTGAGGTCCGGCTCAGCAAGGAAACAGAGCTTCATGACTTAATTCGTGACGGA
ATTAAAGATGTATTTAAACAGCAGCAGCTGATTCCGAGTGCCCAGCTTCCGAAAAAATCGGCACCTGTTATCAAAAATGA
GCAACAGTTCATAACCTTTGATGAAAAGCCTCCGGAAAGAAAAGTACCGGAAAAAGCGCATGCGCCATCTTATTCACCAA
TGAAGCTCAGCTCAGTCGTGAAAGAGCCGATTGATGCGGAGGAAGAATTGCCTCCTCTCCAATTTGATGCTCCATCTATC
GTTGATCAGGAACAAACCCTTGAGGTGTCCGATGTTTCAGAAGAACTGCCTGAAACATTTGAGCAGGAATGCCATGAGGA
ACAGCAGCAGCCAGCGTCTGAGCGGGTTCCGATTATGTACCCGATCGGCCAGATGCACGGGACTTATATATTGGCACAAA
ACGAAAACGGCCTGTATATTATCGACCAGCACGCCGCCCAAGAACGTATTAAATATGAGTACTTTCGTGAAAAGGTGGGG
GAGGTTGAGCCTGAAGTGCAGGATATGATTGTACCGCTGACGTTCCACTACTCCACAAATGAGGCTTTGATTATTGAACA
GCACAAACAAGAGCTCGAAAGCGTCGGTGTCTTTTTAGAGTCATTCGGCTCTAACAGTTACATCGTCCGCTGCCACCCGG
CCTGGTTTCCAAAGGGAGAAGAAGCAGAGCTTATAGAAGAAATCATTCAGCAGGTGCTCGACTCCAAAAATATAGATATT
AAAAAACTCCGCGAGGAAGCGGCGATTATGATGAGCTGCAAAGGCTCCATCAAAGCAAATCGCCACCTCAGAAACGATGA
AATCAAAGCGCTTCTGGACGACCTCCGAAGCACATCAGACCCATTTACATGCCCGCACGGCCGCCCGATCATCATTCACC
ACTCGACATATGAGATGGAAAAGATGTTCAAACGCGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(442-583)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-324)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

45.201

100

0.466