Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   VDS57_RS19285 Genome accession   NZ_CP141839
Coordinates   3636682..3637113 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PN1236     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3631682..3642113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS19265 (VDS57_19265) spoVS 3632244..3632504 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  VDS57_RS19270 (VDS57_19270) tdh 3632769..3633812 (+) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  VDS57_RS19275 (VDS57_19275) kbl 3633825..3635003 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  VDS57_RS19280 (VDS57_19280) miaB 3635151..3636680 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  VDS57_RS19285 (VDS57_19285) ymcA 3636682..3637113 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  VDS57_RS19290 (VDS57_19290) cotE 3637375..3637920 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  VDS57_RS19295 (VDS57_19295) hexA 3638053..3640629 (+) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=838405 VDS57_RS19285 WP_003231834.1 3636682..3637113(+) (ymcA) [Bacillus subtilis strain PN1236]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=838405 VDS57_RS19285 WP_003231834.1 3636682..3637113(+) (ymcA) [Bacillus subtilis strain PN1236]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1