Detailed information NTG0838388

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: VDS57_RS17600
• Genome accession: NZ_CP141839
• Coordinates: 3299380..3301479 (-)
• Length: 699 a.a.
• NCBI ID: WP_324271314.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PN1236
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 3294380..3306479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VDS57_RS17570 (VDS57_17570)	spo0E	3294437..3294694 (+)	258	WP_003218598.1	aspartyl-phosphate phosphatase Spo0E	-
VDS57_RS17575 (VDS57_17575)	-	3294780..3295211 (+)	432	WP_324271316.1	hypothetical protein	-
VDS57_RS17580 (VDS57_17580)	kinD	3295239..3296759 (-)	1521	WP_324271315.1	sporulation kinase KinD	-
VDS57_RS17585 (VDS57_17585)	mhqR	3296952..3297389 (+)	438	WP_003232475.1	MarR family transcriptional regulator MhqR	-
VDS57_RS17590 (VDS57_17590)	motB	3297429..3298211 (-)	783	WP_014479633.1	flagellar motor protein MotB	-
VDS57_RS17595 (VDS57_17595)	motA	3298186..3298995 (-)	810	WP_014479634.1	flagellar motor stator protein MotA	-
VDS57_RS17600 (VDS57_17600)	clpE	3299380..3301479 (-)	2100	WP_324271314.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
VDS57_RS17605 (VDS57_17605)	-	3301847..3302890 (+)	1044	WP_014479636.1	hypothetical protein	-
VDS57_RS17610 (VDS57_17610)	queC	3303203..3303862 (+)	660	WP_069964140.1	7-cyano-7-deazaguanine synthase QueC	-
VDS57_RS17615 (VDS57_17615)	queD	3303855..3304304 (+)	450	WP_003232462.1	6-carboxytetrahydropterin synthase QueD	-
VDS57_RS17620 (VDS57_17620)	queE	3304297..3305028 (+)	732	WP_014479638.1	7-carboxy-7-deazaguanine synthase QueE	-
VDS57_RS17625 (VDS57_17625)	queF	3305046..3305543 (+)	498	WP_003218613.1	preQ(1) synthase	-
VDS57_RS17630 (VDS57_17630)	ykvR	3305864..3306154 (+)	291	WP_121591733.1	YkvR family protein	-
VDS57_RS17635 (VDS57_17635)	ykvS	3306276..3306461 (-)	186	WP_003232446.1	YkvS family protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77804.90 Da
• Isoelectric Point: 5.1824

>NTDB_id=838388 VDS57_RS17600 WP_324271314.1 3299380..3301479(-) (clpE) [Bacillus subtilis strain PN1236]
MRCQHCHQNEATIRLNMQINSVHKQMVLCETCYNELTRKPSMSMGPQSFGFPFEQAFQPKEKSAAKQSGKKGLLDELAQN
ITNGAKAGLIDPVIGRDDEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVA
NTGIRGQFEERMKQLITELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAAL
ERRFQPVMVQEPSIEQAILILQGIKDKYEAYHGVTFSNEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLLIDELN
DEDAAERLTAIEAEKTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVEAEHIQEIVEQKTGIPVGKLQADEQTKM
KELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDAIIRLDMSEYME
KHAVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGAGEKQTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTD
EAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEITSFHVILEDDKIKVQAK

Nucleotide

• Length: 2100 bp

>NTDB_id=838388 VDS57_RS17600 WP_324271314.1 3299380..3301479(-) (clpE) [Bacillus subtilis strain PN1236]
ATGCGTTGTCAACATTGTCATCAAAACGAGGCGACGATTCGCCTTAACATGCAAATAAATTCCGTTCATAAACAGATGGT
TCTTTGTGAAACTTGCTATAACGAACTGACCCGTAAACCTTCAATGAGTATGGGTCCTCAATCTTTCGGATTTCCGTTTG
AACAGGCATTCCAGCCGAAAGAAAAGAGCGCAGCAAAACAAAGCGGAAAAAAAGGGCTGCTTGATGAGCTGGCTCAAAAT
ATTACAAACGGTGCAAAAGCCGGTCTCATTGACCCCGTCATCGGCCGTGATGATGAAGTGGCGCGAGTGATCGAAATTCT
AAACCGCCGGAACAAAAACAATCCGGTTCTTATTGGTGAGCCGGGTGTAGGGAAAACTGCCATCGCTGAAGGGCTCGCTT
TAAAAATTGCTGAAGGTGATGTTCCAAACAAACTGAAAAACAAAGAGCTATATTTGCTTGATGTTGCATCCCTTGTTGCA
AACACAGGGATCAGAGGCCAATTTGAGGAGAGAATGAAACAGCTGATCACTGAGCTGAAGGAACGAAAAAATGTCATTCT
GTTCATTGATGAAATTCACCTTCTCGTCGGCGCAGGCTCTGCAGAAGGATCAATGGACGCCGGCAACATTCTCAAACCGG
CCCTAGCCAGAGGCGAACTGCAAGTCATTGGTGCGACAACACTGAAAGAATATCGTCAAATCGAAAAAGATGCCGCGCTG
GAAAGACGTTTTCAGCCTGTCATGGTGCAGGAGCCTTCAATTGAACAGGCTATCCTCATTCTGCAAGGGATTAAAGACAA
ATACGAGGCATACCATGGCGTAACATTCAGTAATGAAGCAATCAAAGCATGTGTCACTTTATCATCCCGCTACATTCAGG
ACAGACACCTGCCGGATAAAGCAATTGATTTATTAGATGAAGCAGGTTCAAAAGCCAACCTGTTAATTGATGAACTGAAT
GATGAGGATGCCGCTGAACGCTTAACTGCAATTGAAGCCGAAAAAACAAAAGCCCTGGAAGAAGAAAATTACGAACTTGC
GGCAAAACTCCGTGATGAAGAACTCGCATTGGAGAAAAAACTGAACAGCTCCTCCGCTCATACCGCTGTCACTGTGGAAG
CTGAGCACATTCAGGAAATTGTTGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAGGCAGACGAACAAACGAAAATG
AAAGAACTCGAAGCAAAACTTCATGAACGCGTGATTGGACAAGAAGCCGCTGTTCAAAAAGTGGCAAAGGCGGTAAGACG
AAGCCGCGCCGGTTTAAAATCCAAAAACAGACCAGTCGGCTCCTTCCTCTTCGTCGGTCCTACCGGCGTAGGGAAAACAG
AGCTTTCTAAAACACTGGCAGATGAATTATTCGGCACAAAAGACGCTATTATCCGACTCGATATGAGCGAATACATGGAG
AAACACGCCGTATCTAAAATTATCGGTTCACCGCCTGGATATGTCGGCCATGAGGAAGCTGGACAATTAACTGAGAAAGT
GCGCCGCAATCCTTACAGCATTGTGTTGCTGGATGAGATTGAAAAAGCACACCCAGACGTTCAGCATATGTTCCTGCAAA
TTATGGAGGATGGCCGTCTGACAGACAGCCAAGGCAGAACTGTAAGCTTCAAAGACACAGTGATCATCATGACAAGTAAT
GCGGGTGCTGGTGAGAAACAAACGAAAGTCGGTTTCCAATCAGATGACAGTGTCATCGAAGAACAAACATTGATTGATTC
ACTGAGCATGTTCTTTAAACCTGAGTTCCTCAACCGTTTTGACAGCATTATTGAGTTCCGCTCATTGGAAAAAGAACATC
TTGTCAAAATCGTCAGCCTTCTTCTTGGAGAACTTGAAGAAACATTGGCTGAACGGGGCATTAGCTTGAATGTGACAGAT
GAAGCGAAAGAAAAAATCGCTGAGCTGGGCTACCACCCTTCATTCGGTGCACGTCCGCTTAGAAGAACCATCCAAGAATG
GGTTGAGGATGAAATGACCGATCTGCTGCTTGATAATGGCGAGATCACAAGTTTTCACGTGATTTTAGAAGATGATAAAA
TCAAAGTGCAAGCGAAATAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (253-352)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-603)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-247)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (609-679)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	56.393	100	0.599
clpC	Lactococcus lactis subsp. cremoris KW2	56.148	100	0.588
clpE	Streptococcus pneumoniae TIGR4	54.785	100	0.565
clpE	Streptococcus pneumoniae Rx1	54.785	100	0.565
clpE	Streptococcus pneumoniae D39	54.785	100	0.565
clpE	Streptococcus pneumoniae R6	54.785	100	0.565
clpC	Bacillus subtilis subsp. subtilis str. 168	53.858	90.844	0.489
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.687	89.7	0.428
clpC	Streptococcus thermophilus LMD-9	45.274	93.848	0.425
clpC	Streptococcus pneumoniae D39	46.094	91.559	0.422
clpC	Streptococcus pneumoniae Rx1	46.094	91.559	0.422
clpC	Streptococcus thermophilus LMG 18311	44.817	93.848	0.421
clpC	Streptococcus pneumoniae TIGR4	46.688	88.555	0.413
clpC	Streptococcus mutans UA159	46.055	88.841	0.409
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.914	86.695	0.363