Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   VDS57_RS04415 Genome accession   NZ_CP141839
Coordinates   808764..809627 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain PN1236     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 803764..814627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS04380 (VDS57_04380) mrpE 803932..804408 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  VDS57_RS04385 (VDS57_04385) mrpF 804408..804692 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VDS57_RS04390 (VDS57_04390) mnhG 804676..805050 (+) 375 WP_324271460.1 monovalent cation/H(+) antiporter subunit G -
  VDS57_RS04395 (VDS57_04395) yuxO 805089..805469 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  VDS57_RS04400 (VDS57_04400) comA 805488..806132 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VDS57_RS04405 (VDS57_04405) comP 806213..808525 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  VDS57_RS04410 (VDS57_04410) comX 808541..808762 (-) 222 WP_014480704.1 competence pheromone ComX -
  VDS57_RS04415 (VDS57_04415) comQ 808764..809627 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  VDS57_RS04420 (VDS57_04420) degQ 809812..809952 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VDS57_RS04425 (VDS57_04425) - 810174..810299 (+) 126 WP_003228793.1 hypothetical protein -
  VDS57_RS04430 (VDS57_04430) - 810414..810782 (+) 369 WP_046381300.1 hypothetical protein -
  VDS57_RS04435 (VDS57_04435) pdeH 810758..811987 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  VDS57_RS04440 (VDS57_04440) pncB 812123..813595 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  VDS57_RS04445 (VDS57_04445) pncA 813611..814162 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=838306 VDS57_RS04415 WP_014480705.1 808764..809627(-) (comQ) [Bacillus subtilis strain PN1236]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=838306 VDS57_RS04415 WP_014480705.1 808764..809627(-) (comQ) [Bacillus subtilis strain PN1236]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439