Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QPL77_RS05095 Genome accession   NZ_CP126521
Coordinates   1056656..1057234 (+) Length   192 a.a.
NCBI ID   WP_012009479.1    Uniprot ID   A8FBP5
Organism   Bacillus pumilus strain Monterrey_S2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051656..1062234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS05075 (QPL77_05075) - 1052149..1053444 (-) 1296 WP_144522800.1 globin-coupled sensor protein -
  QPL77_RS05080 (QPL77_05080) - 1053536..1055068 (-) 1533 WP_211063211.1 FAD-dependent oxidoreductase -
  QPL77_RS05085 (QPL77_05085) - 1055214..1056074 (+) 861 WP_211063210.1 SDR family oxidoreductase -
  QPL77_RS05090 (QPL77_05090) - 1056137..1056367 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  QPL77_RS05095 (QPL77_05095) comK 1056656..1057234 (+) 579 WP_012009479.1 competence protein ComK Regulator
  QPL77_RS05100 (QPL77_05100) - 1057394..1058500 (+) 1107 WP_211063209.1 D-TA family PLP-dependent enzyme -
  QPL77_RS05105 (QPL77_05105) - 1058813..1059295 (+) 483 WP_144522804.1 hypothetical protein -
  QPL77_RS05110 (QPL77_05110) - 1059303..1059563 (+) 261 WP_249407378.1 hypothetical protein -
  QPL77_RS05115 (QPL77_05115) - 1059629..1059904 (+) 276 WP_211063208.1 barstar family protein -
  QPL77_RS05120 (QPL77_05120) ceuB 1060070..1061020 (+) 951 WP_211063207.1 ABC transporter permease Machinery gene
  QPL77_RS05125 (QPL77_05125) - 1061013..1061963 (+) 951 WP_211063206.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22332.40 Da        Isoelectric Point: 8.7996

>NTDB_id=838297 QPL77_RS05095 WP_012009479.1 1056656..1057234(+) (comK) [Bacillus pumilus strain Monterrey_S2]
MSGISETPLDSYVINQATMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=838297 QPL77_RS05095 WP_012009479.1 1056656..1057234(+) (comK) [Bacillus pumilus strain Monterrey_S2]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAGCAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCACATAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATTTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCTTTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACAAAATTTCAAGATCGTCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTACGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62