Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QPL81_RS08620 Genome accession   NZ_CP126520
Coordinates   1226254..1226577 (-) Length   107 a.a.
NCBI ID   WP_000578873.1    Uniprot ID   A0A2B5EZM0
Organism   Bacillus toyonensis strain Cuernavaca_S4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221254..1231577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL81_RS08595 (QPL81_08595) - 1221501..1222787 (+) 1287 WP_000247036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QPL81_RS08600 (QPL81_08600) - 1222982..1223551 (+) 570 WP_000767788.1 signal peptidase I -
  QPL81_RS08605 (QPL81_08605) - 1223616..1224203 (+) 588 WP_000172853.1 CalY family protein -
  QPL81_RS08610 (QPL81_08610) - 1224324..1225118 (+) 795 WP_284557328.1 DUF4047 domain-containing protein -
  QPL81_RS08615 (QPL81_08615) calY 1225585..1226178 (+) 594 WP_000053720.1 biofilm matrix protein CalY -
  QPL81_RS08620 (QPL81_08620) sinR 1226254..1226577 (-) 324 WP_000578873.1 helix-turn-helix domain-containing protein Regulator
  QPL81_RS08625 (QPL81_08625) - 1226657..1226791 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  QPL81_RS08630 (QPL81_08630) inhA1 1227137..1229524 (+) 2388 WP_001035956.1 M6 family metalloprotease immune inhibitor InhA1 -
  QPL81_RS08635 (QPL81_08635) - 1229682..1231049 (+) 1368 WP_000028364.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12389.26 Da        Isoelectric Point: 9.6238

>NTDB_id=838256 QPL81_RS08620 WP_000578873.1 1226254..1226577(-) (sinR) [Bacillus toyonensis strain Cuernavaca_S4]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=838256 QPL81_RS08620 WP_000578873.1 1226254..1226577(-) (sinR) [Bacillus toyonensis strain Cuernavaca_S4]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5EZM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701