Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QN340_RS16370 Genome accession   NZ_CP126496
Coordinates   3317933..3318733 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain DY4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3312933..3323733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS16340 (QN340_16340) - 3313912..3314166 (+) 255 WP_020452121.1 DUF2627 domain-containing protein -
  QN340_RS16345 (QN340_16345) - 3314277..3315002 (-) 726 WP_020452122.1 glycerophosphodiester phosphodiesterase -
  QN340_RS16350 (QN340_16350) - 3315136..3315756 (-) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase -
  QN340_RS16355 (QN340_16355) - 3315792..3316097 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  QN340_RS16360 (QN340_16360) - 3316597..3317169 (-) 573 WP_224067275.1 serine acetyltransferase -
  QN340_RS16365 (QN340_16365) - 3317296..3317592 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  QN340_RS16370 (QN340_16370) spo0A 3317933..3318733 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  QN340_RS16375 (QN340_16375) spoIVB 3319023..3320273 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  QN340_RS16380 (QN340_16380) recN 3320488..3322218 (-) 1731 WP_020452128.1 DNA repair protein RecN Machinery gene
  QN340_RS16385 (QN340_16385) argR 3322250..3322699 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  QN340_RS16390 (QN340_16390) - 3322863..3323708 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=838165 QN340_RS16370 WP_003183361.1 3317933..3318733(-) (spo0A) [Bacillus paralicheniformis strain DY4]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=838165 QN340_RS16370 WP_003183361.1 3317933..3318733(-) (spo0A) [Bacillus paralicheniformis strain DY4]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCGTACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGATGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGATTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925