Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VF946_RS02285 Genome accession   NZ_CP141824
Coordinates   453195..454856 (+) Length   553 a.a.
NCBI ID   WP_024405562.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448195..459856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS02255 - 448483..449391 (-) 909 WP_002936272.1 neutral zinc metallopeptidase -
  VF946_RS02260 xseA 449558..450901 (+) 1344 WP_238716829.1 exodeoxyribonuclease VII large subunit -
  VF946_RS02265 - 450876..451091 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  VF946_RS02270 - 451091..451960 (+) 870 WP_024405564.1 polyprenyl synthetase family protein -
  VF946_RS02275 - 451953..452774 (+) 822 WP_024405563.1 TlyA family RNA methyltransferase -
  VF946_RS02280 - 452767..453192 (+) 426 WP_002936261.1 arginine repressor -
  VF946_RS02285 recN 453195..454856 (+) 1662 WP_024405562.1 DNA repair protein RecN Machinery gene
  VF946_RS02290 - 454950..455783 (+) 834 WP_024405561.1 DegV family protein -
  VF946_RS02295 - 455776..456609 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  VF946_RS02300 - 456581..457177 (+) 597 WP_002936249.1 YpmS family protein -
  VF946_RS02305 - 457267..457542 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  VF946_RS02310 - 457944..458411 (+) 468 WP_024402670.1 GNAT family N-acetyltransferase -
  VF946_RS02315 - 458433..459692 (-) 1260 WP_074389851.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62689.94 Da        Isoelectric Point: 4.6758

>NTDB_id=838166 VF946_RS02285 WP_024405562.1 453195..454856(+) (recN) [Streptococcus suis strain HB18]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALKQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDDFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEVADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKACFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=838166 VF946_RS02285 WP_024405562.1 453195..454856(+) (recN) [Streptococcus suis strain HB18]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCAAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGATTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGCAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGTAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTTGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGGACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTTGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGCAAGACTT
CCATCGTCTTTGACGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448