Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QOM09_RS21040 Genome accession   NZ_CP126474
Coordinates   4102583..4104322 (-) Length   579 a.a.
NCBI ID   WP_053512778.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain DHC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4097583..4109322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS21010 (QOM09_21010) - 4097816..4098049 (+) 234 WP_053512780.1 DUF2627 domain-containing protein -
  QOM09_RS21015 (QOM09_21015) - 4098099..4098827 (-) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  QOM09_RS21020 (QOM09_21020) - 4098878..4099024 (+) 147 WP_001247671.1 YycC family protein -
  QOM09_RS21025 (QOM09_21025) - 4099265..4099828 (-) 564 WP_053512779.1 PRK06770 family protein -
  QOM09_RS21030 (QOM09_21030) spo0A 4100081..4100875 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  QOM09_RS21035 (QOM09_21035) spoIVB 4101166..4102464 (-) 1299 WP_002101312.1 SpoIVB peptidase -
  QOM09_RS21040 (QOM09_21040) recN 4102583..4104322 (-) 1740 WP_053512778.1 DNA repair protein RecN Machinery gene
  QOM09_RS21045 (QOM09_21045) argR 4104587..4105036 (-) 450 WP_001032580.1 arginine repressor ArgR -
  QOM09_RS21050 (QOM09_21050) - 4105179..4106018 (-) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  QOM09_RS21055 (QOM09_21055) dxs 4106022..4107914 (-) 1893 WP_000366454.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QOM09_RS21060 (QOM09_21060) ispA 4108216..4109106 (-) 891 WP_053512777.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65881.98 Da        Isoelectric Point: 4.7982

>NTDB_id=838091 QOM09_RS21040 WP_053512778.1 4102583..4104322(-) (recN) [Bacillus thuringiensis strain DHC4]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVIMKEATLLSDMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVVSVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=838091 QOM09_RS21040 WP_053512778.1 4102583..4104322(-) (recN) [Bacillus thuringiensis strain DHC4]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGTATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCACGAGGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCTTTAAGTGCC
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGGGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATTGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTATGAAAGAAGCAACGTTGTTAAGTGATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGTATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599