Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLQ03_RS04340 Genome accession   NZ_CP126456
Coordinates   786393..787034 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 781393..792034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS04305 - 782521..782952 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  QLQ03_RS04310 - 782952..783293 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  QLQ03_RS04315 - 783286..784764 (+) 1479 WP_046344384.1 Na+/H+ antiporter subunit D -
  QLQ03_RS04320 - 784771..785250 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  QLQ03_RS04325 - 785250..785531 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  QLQ03_RS04330 mnhG 785515..785889 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  QLQ03_RS04335 - 785980..786369 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  QLQ03_RS04340 comA 786393..787034 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  QLQ03_RS04345 comP 787115..789421 (-) 2307 WP_017367961.1 ATP-binding protein Regulator
  QLQ03_RS04350 comX 789435..789605 (-) 171 WP_008345861.1 competence pheromone ComX -
  QLQ03_RS04355 - 789583..790506 (-) 924 WP_008345863.1 polyprenyl synthetase family protein -
  QLQ03_RS04360 degQ 790658..790798 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QLQ03_RS04365 - 791304..791657 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=837886 QLQ03_RS04340 WP_007500477.1 786393..787034(-) (comA) [Bacillus altitudinis strain KRS010]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=837886 QLQ03_RS04340 WP_007500477.1 786393..787034(-) (comA) [Bacillus altitudinis strain KRS010]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGACGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718