Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QLQ03_RS01030 Genome accession   NZ_CP126456
Coordinates   178976..180046 (-) Length   356 a.a.
NCBI ID   WP_017357987.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173976..185046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS00980 - 174066..174638 (-) 573 WP_041091749.1 signal peptidase I -
  QLQ03_RS00985 tapA 174688..175215 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  QLQ03_RS00990 - 175468..175794 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QLQ03_RS00995 - 175828..176028 (-) 201 WP_046343970.1 YqzE family protein -
  QLQ03_RS01000 comGG 176089..176472 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  QLQ03_RS01005 comGF 176469..176966 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  QLQ03_RS01010 comGE 176908..177222 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  QLQ03_RS01015 comGD 177206..177652 (-) 447 WP_025207620.1 competence type IV pilus minor pilin ComGD -
  QLQ03_RS01020 comGC 177645..177938 (-) 294 WP_081114338.1 competence type IV pilus major pilin ComGC Machinery gene
  QLQ03_RS01025 comGB 177955..178995 (-) 1041 WP_025207621.1 competence type IV pilus assembly protein ComGB -
  QLQ03_RS01030 comGA 178976..180046 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  QLQ03_RS01035 - 180504..181376 (-) 873 WP_046527023.1 STAS domain-containing protein -
  QLQ03_RS01045 - 181602..181982 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QLQ03_RS01050 - 182195..182437 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QLQ03_RS01055 - 182486..183124 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  QLQ03_RS01060 - 183285..183458 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  QLQ03_RS01065 - 183483..183797 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40339.70 Da        Isoelectric Point: 9.0449

>NTDB_id=837876 QLQ03_RS01030 WP_017357987.1 178976..180046(-) (comGA) [Bacillus altitudinis strain KRS010]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=837876 QLQ03_RS01030 WP_017357987.1 178976..180046(-) (comGA) [Bacillus altitudinis strain KRS010]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAGGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCGACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTACAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATTTGGAGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649