Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   VA243_RS04635 Genome accession   NZ_CP141774
Coordinates   975474..976523 (+) Length   349 a.a.
NCBI ID   WP_324714330.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 970474..981523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS04615 - 970477..971220 (+) 744 WP_324714326.1 carbonic anhydrase -
  VA243_RS04620 - 971462..972625 (-) 1164 WP_324714327.1 DUF874 family protein -
  VA243_RS04625 asd 973057..974097 (-) 1041 WP_324714328.1 aspartate-semialdehyde dehydrogenase -
  VA243_RS04630 hisS 974084..975412 (-) 1329 WP_324714329.1 histidine--tRNA ligase -
  VA243_RS04635 waaF 975474..976523 (+) 1050 WP_324714330.1 lipopolysaccharide heptosyltransferase II Regulator
  VA243_RS04640 - 976714..977094 (-) 381 WP_000744161.1 hypothetical protein -
  VA243_RS04645 fusA 977632..979710 (-) 2079 WP_324714331.1 elongation factor G -
  VA243_RS04650 rpsG 979722..980189 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  VA243_RS04655 rpsL 980205..980612 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39577.41 Da        Isoelectric Point: 9.8197

>NTDB_id=837876 VA243_RS04635 WP_324714330.1 975474..976523(+) (waaF) [Helicobacter pylori strain P07353]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGSQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=837876 VA243_RS04635 WP_324714330.1 975474..976523(+) (waaF) [Helicobacter pylori strain P07353]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCGTTTTATCTTAGTGGGCTCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCAATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367