Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QLQ03_RS01020 Genome accession   NZ_CP126456
Coordinates   177645..177938 (-) Length   97 a.a.
NCBI ID   WP_081114338.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172645..182938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS00970 sinR 172804..173139 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QLQ03_RS00975 - 173207..174007 (-) 801 WP_035390805.1 TasA family protein -
  QLQ03_RS00980 - 174066..174638 (-) 573 WP_041091749.1 signal peptidase I -
  QLQ03_RS00985 tapA 174688..175215 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  QLQ03_RS00990 - 175468..175794 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QLQ03_RS00995 - 175828..176028 (-) 201 WP_046343970.1 YqzE family protein -
  QLQ03_RS01000 comGG 176089..176472 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  QLQ03_RS01005 comGF 176469..176966 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  QLQ03_RS01010 comGE 176908..177222 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  QLQ03_RS01015 comGD 177206..177652 (-) 447 WP_025207620.1 competence type IV pilus minor pilin ComGD -
  QLQ03_RS01020 comGC 177645..177938 (-) 294 WP_081114338.1 competence type IV pilus major pilin ComGC Machinery gene
  QLQ03_RS01025 comGB 177955..178995 (-) 1041 WP_025207621.1 competence type IV pilus assembly protein ComGB -
  QLQ03_RS01030 comGA 178976..180046 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  QLQ03_RS01035 - 180504..181376 (-) 873 WP_046527023.1 STAS domain-containing protein -
  QLQ03_RS01045 - 181602..181982 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QLQ03_RS01050 - 182195..182437 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.66 Da        Isoelectric Point: 7.2428

>NTDB_id=837875 QLQ03_RS01020 WP_081114338.1 177645..177938(-) (comGC) [Bacillus altitudinis strain KRS010]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIKNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=837875 QLQ03_RS01020 WP_081114338.1 177645..177938(-) (comGC) [Bacillus altitudinis strain KRS010]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTAAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392