Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   VA243_RS04470 Genome accession   NZ_CP141774
Coordinates   939764..940537 (+) Length   257 a.a.
NCBI ID   WP_324714311.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 934764..945537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS04465 hopL 936019..939750 (+) 3732 WP_324714310.1 Hop family outer membrane protein HopL -
  VA243_RS04470 proC 939764..940537 (+) 774 WP_324714311.1 pyrroline-5-carboxylate reductase Machinery gene
  VA243_RS04475 fic 940561..941094 (+) 534 WP_000549903.1 protein adenylyltransferase Fic -
  VA243_RS04480 ybeY 941151..941573 (-) 423 WP_324714312.1 rRNA maturation RNase YbeY -
  VA243_RS04485 - 941635..942129 (-) 495 WP_000516064.1 flavodoxin -
  VA243_RS04490 - 942219..942800 (-) 582 WP_014535870.1 DedA family protein -
  VA243_RS04495 ccoS 942922..943113 (+) 192 WP_001090943.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  VA243_RS04500 - 943139..944113 (+) 975 WP_324714313.1 NAD(P)/FAD-dependent oxidoreductase -
  VA243_RS04505 - 944121..945281 (-) 1161 WP_324714314.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28156.89 Da        Isoelectric Point: 9.3619

>NTDB_id=837875 VA243_RS04470 WP_324714311.1 939764..940537(+) (proC) [Helicobacter pylori strain P07353]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQARIVPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALSDAINSSHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALSVIESFGNCVRVGNEEQVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACQKSVKKMHP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=837875 VA243_RS04470 WP_324714311.1 939764..940537(+) (proC) [Helicobacter pylori strain P07353]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCGCGCATCG
TTCCCTATAAAAACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCACTAGCTGGCGTGGGTTTTGAAGCTTTAAGCGATGCGATAAATTCTTC
ACATTACCTCAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
GCCAGCGTGGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATCAAAGCATGCCAAAAGAGCGTAAAAAAAATGCACCCCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362