Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QLQ03_RS00970 Genome accession   NZ_CP126456
Coordinates   172804..173139 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 167804..178139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS00950 gcvT 168280..169377 (-) 1098 WP_019743009.1 glycine cleavage system aminomethyltransferase GcvT -
  QLQ03_RS00955 - 169939..171609 (+) 1671 WP_017367587.1 SNF2-related protein -
  QLQ03_RS00960 - 171624..172421 (+) 798 WP_241511274.1 YqhG family protein -
  QLQ03_RS00965 - 172606..172770 (+) 165 WP_080934047.1 anti-repressor SinI family protein -
  QLQ03_RS00970 sinR 172804..173139 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QLQ03_RS00975 - 173207..174007 (-) 801 WP_035390805.1 TasA family protein -
  QLQ03_RS00980 - 174066..174638 (-) 573 WP_041091749.1 signal peptidase I -
  QLQ03_RS00985 tapA 174688..175215 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  QLQ03_RS00990 - 175468..175794 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QLQ03_RS00995 - 175828..176028 (-) 201 WP_046343970.1 YqzE family protein -
  QLQ03_RS01000 comGG 176089..176472 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  QLQ03_RS01005 comGF 176469..176966 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  QLQ03_RS01010 comGE 176908..177222 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  QLQ03_RS01015 comGD 177206..177652 (-) 447 WP_025207620.1 competence type IV pilus minor pilin ComGD -
  QLQ03_RS01020 comGC 177645..177938 (-) 294 WP_081114338.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=837874 QLQ03_RS00970 WP_017357978.1 172804..173139(+) (sinR) [Bacillus altitudinis strain KRS010]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=837874 QLQ03_RS00970 WP_017357978.1 172804..173139(+) (sinR) [Bacillus altitudinis strain KRS010]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928