Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VA243_RS03300 Genome accession   NZ_CP141774
Coordinates   682578..683129 (-) Length   183 a.a.
NCBI ID   WP_124733065.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 677578..688129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS03280 rpmB 677994..678182 (+) 189 WP_324715040.1 50S ribosomal protein L28 -
  VA243_RS03285 - 678332..679468 (+) 1137 WP_120881418.1 potassium channel family protein -
  VA243_RS03290 - 679507..679865 (-) 359 Protein_647 hypothetical protein -
  VA243_RS03295 - 679878..682322 (-) 2445 WP_324715041.1 DUF3519 domain-containing protein -
  VA243_RS03300 ruvA 682578..683129 (-) 552 WP_124733065.1 Holliday junction branch migration protein RuvA Machinery gene
  VA243_RS03305 - 683154..684998 (-) 1845 WP_324715042.1 hypothetical protein -
  VA243_RS03310 murJ 685090..686550 (+) 1461 WP_324715043.1 murein biosynthesis integral membrane protein MurJ -
  VA243_RS03315 cysS 686551..687948 (+) 1398 WP_324715044.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20095.68 Da        Isoelectric Point: 8.0466

>NTDB_id=837872 VA243_RS03300 WP_124733065.1 682578..683129(-) (ruvA) [Helicobacter pylori strain P07353]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPACNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=837872 VA243_RS03300 WP_124733065.1 682578..683129(-) (ruvA) [Helicobacter pylori strain P07353]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATTGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCATGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(141-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361