Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNI29_RS14120 Genome accession   NZ_CP126446
Coordinates   2717049..2718782 (-) Length   577 a.a.
NCBI ID   WP_231417142.1    Uniprot ID   -
Organism   Pontibacillus chungwhensis strain HN14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2712049..2723782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNI29_RS14105 (QNI29_14105) - 2712656..2714236 (-) 1581 WP_231417139.1 FapA family protein -
  QNI29_RS14110 (QNI29_14110) spo0A 2714421..2715206 (-) 786 WP_231417140.1 sporulation transcription factor Spo0A -
  QNI29_RS14115 (QNI29_14115) spoIVB 2715523..2716809 (-) 1287 WP_231417141.1 SpoIVB peptidase -
  QNI29_RS14120 (QNI29_14120) recN 2717049..2718782 (-) 1734 WP_231417142.1 DNA repair protein RecN Machinery gene
  QNI29_RS14125 (QNI29_14125) argR 2718812..2719261 (-) 450 WP_231417596.1 transcriptional regulator ArgR -
  QNI29_RS14130 (QNI29_14130) - 2719397..2720209 (-) 813 WP_231417143.1 TlyA family RNA methyltransferase -
  QNI29_RS14135 (QNI29_14135) dxs 2720214..2722106 (-) 1893 WP_231417144.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNI29_RS14140 (QNI29_14140) - 2722126..2722722 (-) 597 WP_231417145.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64900.09 Da        Isoelectric Point: 4.5930

>NTDB_id=837851 QNI29_RS14120 WP_231417142.1 2717049..2718782(-) (recN) [Pontibacillus chungwhensis strain HN14]
MLAELSIKDFAIIDEVSIQFREGLTVLTGETGAGKSIIIDAIQLLTGGRGSAEFVRYGTKKAEIEGLFFLDHDRHQAYSK
AELFGVDIAEDGMLVLNRTISANGKSICRVNGKLVTLAILREFGQTLIDIHTQHETQSLMDVDRHIELLDLFDREQIGQA
KLDYLELYKEFDALKKRYKELSENEQEMAQRLDLLEFQYNELDQANLKPGEDDELGEQRNRLMNHEKIYKGLNDGYNALY
GEQKALDWLSLALSSLENARAYDDEIAKKAEELANHYYMVEELAHGVRNQLDGLEFSEEELDSIESRLNEINRLKKKYGQ
SVNDMLEYAATVEEEIDQIKNKDTHVSKLEQSIQEKAEDIALEAKQLHEVREQAASALTDAIQEELKDLHLEKAAFGVDF
SSSEGSAQDPVIDGKPVKIGQNGYDLVKFMITTNPGEPLKDIHKVASGGELSRIMLALKRIFSKHQGVTSVIFDEVDTGV
SGRVAQAIAEKIHGISSSSQVLCISHLPQVAAMADTHLYIRKEVENDRTKTIVEELDVSNKVEELSRMISGAEMTETTKD
HATELLDLAEKFKKQHV

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=837851 QNI29_RS14120 WP_231417142.1 2717049..2718782(-) (recN) [Pontibacillus chungwhensis strain HN14]
GTGTTAGCTGAATTATCCATAAAAGATTTTGCTATAATCGATGAAGTTTCCATTCAATTTAGAGAAGGCTTAACCGTGCT
GACTGGAGAGACAGGTGCAGGGAAGTCCATTATCATTGATGCTATTCAACTGCTTACAGGAGGTCGAGGTTCTGCTGAAT
TTGTTCGCTATGGGACGAAGAAAGCTGAAATTGAAGGCTTATTCTTTCTTGATCATGATCGCCATCAGGCCTATAGTAAA
GCTGAATTATTCGGTGTAGATATCGCAGAAGATGGAATGCTTGTACTAAATCGTACCATTAGTGCCAATGGGAAGAGTAT
TTGTCGCGTCAACGGAAAGCTTGTAACGCTTGCAATCTTGCGGGAATTTGGCCAGACTCTAATTGATATACATACCCAGC
ACGAGACGCAATCCTTAATGGATGTGGATCGACATATAGAATTATTGGACTTATTCGACCGGGAACAAATTGGACAAGCA
AAATTAGACTATTTGGAGTTATACAAGGAGTTCGACGCTTTAAAAAAACGATATAAAGAATTAAGTGAGAACGAACAAGA
AATGGCACAACGTCTTGATTTGTTAGAATTCCAATACAATGAATTAGATCAGGCTAATTTAAAGCCTGGAGAAGATGATG
AACTCGGAGAACAACGCAACCGTTTAATGAATCACGAAAAAATTTATAAAGGGCTTAATGATGGATATAACGCCCTGTAT
GGTGAACAGAAAGCTTTGGATTGGTTATCCCTTGCATTGTCCTCTCTTGAGAACGCTAGGGCTTATGATGATGAAATTGC
GAAGAAAGCAGAAGAGTTAGCAAATCATTACTACATGGTAGAAGAGTTGGCTCATGGGGTTCGGAATCAACTTGATGGGT
TAGAGTTTAGTGAAGAAGAGCTCGATTCCATTGAATCAAGATTGAATGAAATCAATCGCTTAAAGAAAAAATACGGTCAA
AGTGTAAACGACATGTTAGAGTATGCAGCAACAGTGGAAGAAGAGATTGATCAGATCAAAAATAAGGACACCCATGTATC
TAAATTAGAACAATCCATTCAAGAAAAAGCAGAAGATATCGCACTAGAAGCAAAACAGCTTCATGAAGTTCGCGAACAGG
CAGCTTCCGCATTAACGGATGCCATTCAAGAAGAATTAAAAGACCTTCATTTAGAGAAGGCGGCTTTCGGTGTGGATTTC
TCGAGTTCTGAAGGTTCAGCACAGGACCCGGTAATCGACGGTAAACCTGTGAAAATTGGGCAGAATGGTTATGATTTGGT
GAAGTTTATGATTACCACAAATCCTGGGGAACCATTAAAAGATATCCATAAAGTGGCAAGTGGCGGTGAATTATCTCGTA
TTATGCTTGCATTAAAACGGATTTTCTCAAAACACCAGGGTGTCACGAGTGTGATCTTTGATGAGGTAGACACTGGAGTG
AGTGGACGTGTCGCTCAGGCAATAGCTGAGAAAATACACGGTATTTCTTCTTCATCTCAAGTGCTCTGTATTTCTCATTT
ACCTCAAGTGGCAGCGATGGCGGATACACATTTGTACATTCGTAAAGAAGTGGAAAATGATCGTACTAAAACCATCGTAG
AGGAATTAGATGTTTCAAATAAAGTAGAAGAATTGAGCCGCATGATCAGTGGTGCTGAGATGACTGAAACCACAAAAGAT
CACGCTACAGAATTGCTTGATCTCGCTGAAAAATTCAAGAAGCAACATGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.261

99.653

0.541