Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   QN096_RS01965 Genome accession   NZ_CP126342
Coordinates   392830..393237 (+) Length   135 a.a.
NCBI ID   WP_021218373.1    Uniprot ID   A0AB36F8H0
Organism   Pseudomonas otitidis strain TL17     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 387830..398237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS01935 (QN096_01935) - 388000..389004 (-) 1005 WP_284547671.1 aspartate carbamoyltransferase catalytic subunit -
  QN096_RS01940 (QN096_01940) pyrR 389030..389539 (-) 510 WP_044403576.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QN096_RS01945 (QN096_01945) ruvX 389552..389995 (-) 444 WP_044403573.1 Holliday junction resolvase RuvX -
  QN096_RS01950 (QN096_01950) - 389995..390564 (-) 570 WP_044403571.1 YqgE/AlgH family protein -
  QN096_RS01955 (QN096_01955) - 390611..391504 (-) 894 WP_284547672.1 energy transducer TonB -
  QN096_RS01960 (QN096_01960) gshB 391592..392563 (-) 972 WP_044403568.1 glutathione synthase -
  QN096_RS01965 (QN096_01965) pilG 392830..393237 (+) 408 WP_021218373.1 twitching motility response regulator PilG Regulator
  QN096_RS01970 (QN096_01970) pilH 393285..393650 (+) 366 WP_003458790.1 twitching motility response regulator PilH -
  QN096_RS01975 (QN096_01975) - 393694..394230 (+) 537 WP_279803187.1 chemotaxis protein CheW -
  QN096_RS01980 (QN096_01980) - 394424..396469 (+) 2046 WP_279861728.1 methyl-accepting chemotaxis protein -
  QN096_RS01985 (QN096_01985) - 396532..397392 (+) 861 WP_044403650.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14842.21 Da        Isoelectric Point: 6.7128

>NTDB_id=837744 QN096_RS01965 WP_021218373.1 392830..393237(+) (pilG) [Pseudomonas otitidis strain TL17]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=837744 QN096_RS01965 WP_021218373.1 392830..393237(+) (pilG) [Pseudomonas otitidis strain TL17]
ATGGAACAGCATTCCGAGGGTTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGTCGCACCGCTGAAACTCTGCT
GAAGAAGGTGGGTTGCGAGGTCATCACGGCTGTCGACGGTTTCGATGCCCTGGCCAAGATCGCGGACACACACCCGAACA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGACGGTTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCTTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGACCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAACTGCTCGGCGCGATCAAGACCCACGTGCCTGATTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385