Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QN289_RS03505 | Genome accession | NZ_CP126312 |
| Coordinates | 670768..671184 (+) | Length | 138 a.a. |
| NCBI ID | WP_284182914.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus strain KFRI-K200347 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 664474..699618 | 670768..671184 | within | 0 |
Gene organization within MGE regions
Location: 664474..699618
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN289_RS03450 (QN289_03450) | - | 664474..665937 (-) | 1464 | WP_284182907.1 | recombinase family protein | - |
| QN289_RS03455 (QN289_03455) | - | 666027..666617 (-) | 591 | WP_284182908.1 | DUF5067 domain-containing protein | - |
| QN289_RS03460 (QN289_03460) | - | 666692..667093 (-) | 402 | WP_284182909.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QN289_RS03465 (QN289_03465) | - | 667095..667430 (-) | 336 | WP_259770237.1 | helix-turn-helix transcriptional regulator | - |
| QN289_RS03470 (QN289_03470) | - | 667579..667806 (+) | 228 | WP_284182910.1 | helix-turn-helix transcriptional regulator | - |
| QN289_RS03475 (QN289_03475) | - | 667825..667989 (+) | 165 | WP_284182911.1 | hypothetical protein | - |
| QN289_RS03480 (QN289_03480) | - | 668049..668600 (+) | 552 | WP_237023253.1 | helix-turn-helix transcriptional regulator | - |
| QN289_RS03485 (QN289_03485) | - | 668597..668749 (+) | 153 | WP_186738769.1 | hypothetical protein | - |
| QN289_RS03490 (QN289_03490) | - | 669056..669238 (+) | 183 | WP_284182912.1 | hypothetical protein | - |
| QN289_RS03495 (QN289_03495) | bet | 669238..670005 (+) | 768 | WP_284182913.1 | phage recombination protein Bet | - |
| QN289_RS03500 (QN289_03500) | - | 669887..670756 (+) | 870 | WP_284183037.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| QN289_RS03505 (QN289_03505) | ssb | 670768..671184 (+) | 417 | WP_284182914.1 | single-stranded DNA-binding protein | Machinery gene |
| QN289_RS03510 (QN289_03510) | - | 671197..672156 (+) | 960 | WP_284182915.1 | DnaD domain protein | - |
| QN289_RS03515 (QN289_03515) | - | 672153..672566 (+) | 414 | WP_284182917.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QN289_RS03520 (QN289_03520) | - | 672556..672768 (+) | 213 | WP_284182918.1 | hypothetical protein | - |
| QN289_RS03525 (QN289_03525) | - | 672780..673163 (+) | 384 | WP_284182919.1 | hypothetical protein | - |
| QN289_RS03530 (QN289_03530) | - | 673166..673351 (+) | 186 | WP_284182920.1 | hypothetical protein | - |
| QN289_RS03535 (QN289_03535) | - | 673351..673761 (+) | 411 | WP_284182922.1 | hypothetical protein | - |
| QN289_RS03540 (QN289_03540) | - | 673745..673942 (+) | 198 | WP_284182923.1 | hypothetical protein | - |
| QN289_RS03545 (QN289_03545) | - | 674113..674340 (+) | 228 | WP_284182924.1 | hypothetical protein | - |
| QN289_RS03550 (QN289_03550) | - | 674472..674693 (+) | 222 | WP_284182925.1 | hypothetical protein | - |
| QN289_RS03555 (QN289_03555) | - | 674773..675090 (+) | 318 | WP_284182926.1 | MazG-like family protein | - |
| QN289_RS03560 (QN289_03560) | - | 675090..675242 (+) | 153 | WP_284182927.1 | hypothetical protein | - |
| QN289_RS03565 (QN289_03565) | - | 675320..675745 (+) | 426 | WP_284182928.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| QN289_RS03570 (QN289_03570) | - | 676062..676190 (+) | 129 | WP_260332653.1 | hypothetical protein | - |
| QN289_RS03575 (QN289_03575) | - | 676424..676570 (+) | 147 | WP_284183044.1 | hypothetical protein | - |
| QN289_RS03580 (QN289_03580) | - | 676603..677097 (+) | 495 | WP_284182929.1 | terminase small subunit | - |
| QN289_RS03585 (QN289_03585) | - | 677075..678409 (+) | 1335 | WP_284182930.1 | PBSX family phage terminase large subunit | - |
| QN289_RS03590 (QN289_03590) | - | 678469..679941 (+) | 1473 | WP_284182931.1 | phage portal protein | - |
| QN289_RS03595 (QN289_03595) | - | 679941..681065 (+) | 1125 | WP_284182933.1 | phage minor capsid protein | - |
| QN289_RS03600 (QN289_03600) | - | 681158..681730 (+) | 573 | WP_284182934.1 | phage scaffolding protein | - |
| QN289_RS03605 (QN289_03605) | - | 681732..682601 (+) | 870 | WP_284182935.1 | capsid protein | - |
| QN289_RS03610 (QN289_03610) | - | 682669..683073 (+) | 405 | WP_284182936.1 | hypothetical protein | - |
| QN289_RS03615 (QN289_03615) | - | 683066..683410 (+) | 345 | WP_284182937.1 | putative minor capsid protein | - |
| QN289_RS03620 (QN289_03620) | - | 683419..683745 (+) | 327 | WP_284183038.1 | minor capsid protein | - |
| QN289_RS03625 (QN289_03625) | - | 683745..684137 (+) | 393 | WP_284182938.1 | minor capsid protein | - |
| QN289_RS03630 (QN289_03630) | - | 684148..684603 (+) | 456 | WP_284182939.1 | phage tail protein | - |
| QN289_RS03635 (QN289_03635) | - | 684743..685207 (+) | 465 | WP_284182940.1 | hypothetical protein | - |
| QN289_RS03640 (QN289_03640) | - | 685219..685812 (+) | 594 | WP_284182941.1 | Gp15 family bacteriophage protein | - |
| QN289_RS03645 (QN289_03645) | - | 685805..688984 (+) | 3180 | WP_284182943.1 | hypothetical protein | - |
| QN289_RS03650 (QN289_03650) | - | 688968..689693 (+) | 726 | WP_284182944.1 | phage tail domain-containing protein | - |
| QN289_RS03655 (QN289_03655) | - | 689693..691240 (+) | 1548 | WP_284182945.1 | phage tail protein | - |
| QN289_RS03660 (QN289_03660) | - | 691230..693155 (+) | 1926 | WP_284182946.1 | hypothetical protein | - |
| QN289_RS03665 (QN289_03665) | - | 693155..693346 (+) | 192 | WP_284182947.1 | XkdX family protein | - |
| QN289_RS03670 (QN289_03670) | - | 693427..693702 (+) | 276 | WP_284182948.1 | hypothetical protein | - |
| QN289_RS03675 (QN289_03675) | - | 693699..693908 (+) | 210 | WP_250800166.1 | phage holin | - |
| QN289_RS03680 (QN289_03680) | - | 693905..694795 (+) | 891 | WP_284182949.1 | peptidoglycan recognition family protein | - |
| QN289_RS03685 (QN289_03685) | - | 694932..695162 (+) | 231 | WP_284182950.1 | hypothetical protein | - |
| QN289_RS03690 (QN289_03690) | - | 695235..695627 (+) | 393 | WP_284182951.1 | hypothetical protein | - |
| QN289_RS03695 (QN289_03695) | - | 695639..695842 (+) | 204 | WP_284182952.1 | hypothetical protein | - |
| QN289_RS03700 (QN289_03700) | - | 695839..696063 (+) | 225 | WP_284182953.1 | hypothetical protein | - |
| QN289_RS03705 (QN289_03705) | - | 696089..696262 (-) | 174 | WP_284182954.1 | hypothetical protein | - |
| QN289_RS03710 (QN289_03710) | - | 696288..696689 (-) | 402 | WP_284182955.1 | hypothetical protein | - |
| QN289_RS03715 (QN289_03715) | - | 696770..697015 (+) | 246 | WP_237023256.1 | competence protein ComGC | - |
| QN289_RS03720 (QN289_03720) | - | 697047..697439 (+) | 393 | WP_004270899.1 | hypothetical protein | - |
| QN289_RS03725 (QN289_03725) | - | 697504..697731 (+) | 228 | WP_158070299.1 | hypothetical protein | - |
| QN289_RS03730 (QN289_03730) | - | 697802..698182 (+) | 381 | WP_004270914.1 | ComGF family competence protein | - |
| QN289_RS03735 (QN289_03735) | - | 698160..698483 (+) | 324 | WP_039099486.1 | hypothetical protein | - |
| QN289_RS03740 (QN289_03740) | - | 698599..699618 (+) | 1020 | WP_307722871.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15130.65 Da Isoelectric Point: 6.4464
>NTDB_id=837529 QN289_RS03505 WP_284182914.1 670768..671184(+) (ssb) [Latilactobacillus curvatus strain KFRI-K200347]
MNSVNLIGNLTADIKLETSSNQTHYARFSLAVRRDANHTDFINCVAFGKTAEMLSNQIKGSKIGVSGSWQTGSYQNQQGQ
KVYTNDCSVYRVYFLSPLNKDADTRNTAPSSAAPANNYVDPFANNGQPIDISDNDLPF
MNSVNLIGNLTADIKLETSSNQTHYARFSLAVRRDANHTDFINCVAFGKTAEMLSNQIKGSKIGVSGSWQTGSYQNQQGQ
KVYTNDCSVYRVYFLSPLNKDADTRNTAPSSAAPANNYVDPFANNGQPIDISDNDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=837529 QN289_RS03505 WP_284182914.1 670768..671184(+) (ssb) [Latilactobacillus curvatus strain KFRI-K200347]
ATGAATTCAGTAAACTTAATCGGCAACTTAACAGCCGATATTAAATTGGAAACAAGTAGCAATCAAACACACTATGCAAG
ATTCTCTTTAGCGGTAAGACGTGACGCTAATCACACGGACTTCATTAACTGTGTTGCGTTTGGCAAGACGGCAGAAATGC
TAAGTAATCAGATAAAAGGCTCAAAGATTGGTGTTAGTGGCAGCTGGCAAACAGGCAGCTATCAAAACCAACAAGGACAA
AAGGTTTACACCAACGATTGTAGCGTTTATCGAGTTTATTTCTTATCACCGCTAAATAAAGATGCTGACACGCGCAATAC
AGCGCCAAGTTCAGCAGCGCCAGCTAATAACTATGTTGATCCATTCGCAAATAACGGACAACCAATCGATATTTCGGATA
ACGATTTACCATTCTAA
ATGAATTCAGTAAACTTAATCGGCAACTTAACAGCCGATATTAAATTGGAAACAAGTAGCAATCAAACACACTATGCAAG
ATTCTCTTTAGCGGTAAGACGTGACGCTAATCACACGGACTTCATTAACTGTGTTGCGTTTGGCAAGACGGCAGAAATGC
TAAGTAATCAGATAAAAGGCTCAAAGATTGGTGTTAGTGGCAGCTGGCAAACAGGCAGCTATCAAAACCAACAAGGACAA
AAGGTTTACACCAACGATTGTAGCGTTTATCGAGTTTATTTCTTATCACCGCTAAATAAAGATGCTGACACGCGCAATAC
AGCGCCAAGTTCAGCAGCGCCAGCTAATAACTATGTTGATCCATTCGCAAATAACGGACAACCAATCGATATTTCGGATA
ACGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
40.828 |
100 |
0.5 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.842 |
100 |
0.457 |