Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QN061_RS04590 Genome accession   NZ_CP126305
Coordinates   985000..986361 (+) Length   453 a.a.
NCBI ID   WP_172560567.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 980000..991361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS04575 (QN061_04575) - 980612..981841 (-) 1230 WP_172560064.1 integrase domain-containing protein -
  QN061_RS04585 (QN061_04585) uvrB 982683..984713 (+) 2031 WP_222795973.1 excinuclease ABC subunit UvrB -
  QN061_RS04590 (QN061_04590) luxO 985000..986361 (+) 1362 WP_172560567.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QN061_RS04595 (QN061_04595) luxU 986368..986706 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  QN061_RS04600 (QN061_04600) - 986695..987585 (-) 891 WP_222729990.1 YvcK family protein -
  QN061_RS04605 (QN061_04605) moaA 987896..988885 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  QN061_RS04610 (QN061_04610) moaB 988957..989469 (+) 513 WP_222792705.1 molybdenum cofactor biosynthesis protein B -
  QN061_RS04615 (QN061_04615) moaC 989479..989958 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  QN061_RS04620 (QN061_04620) moaD 989955..990200 (+) 246 WP_044365260.1 molybdopterin synthase sulfur carrier subunit -
  QN061_RS04625 (QN061_04625) moaE 990202..990657 (+) 456 WP_061056720.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50370.60 Da        Isoelectric Point: 5.5480

>NTDB_id=837420 QN061_RS04590 WP_172560567.1 985000..986361(+) (luxO) [Vibrio fluvialis strain SD21SC3889PM]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREINLNMLPPPLNQPSENIISVPKVNAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=837420 QN061_RS04590 WP_172560567.1 985000..986361(+) (luxO) [Vibrio fluvialis strain SD21SC3889PM]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCTGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACAGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCATTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGATGGCGGCACTCTGTTCCTTGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGTACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGTGCGACCAACCGCGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAACAATACGAATGGCC
GGGTAATGTGCGTCAACTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCAATCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAACATCATCAGTGTTCCGAAGGTTAACGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGTTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGTGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.031

98.455

0.896
  pilR Pseudomonas aeruginosa PAK

39.013

98.455

0.384