Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | VA249_RS11625 | Genome accession | NZ_AP024165 |
| Coordinates | 2547759..2548373 (+) | Length | 204 a.a. |
| NCBI ID | WP_128810226.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya108 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2542759..2553373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA249_RS11605 (VYA_22070) | - | 2543074..2543991 (-) | 918 | WP_221069943.1 | ABC transporter ATP-binding protein | - |
| VA249_RS11610 (VYA_22080) | - | 2544213..2545883 (-) | 1671 | WP_221068080.1 | SulP family inorganic anion transporter | - |
| VA249_RS11615 (VYA_22090) | can | 2546158..2546826 (+) | 669 | WP_221068081.1 | carbonate dehydratase | - |
| VA249_RS11620 (VYA_22100) | hpt | 2546905..2547435 (-) | 531 | WP_211916007.1 | hypoxanthine phosphoribosyltransferase | - |
| VA249_RS11625 (VYA_22110) | opaR | 2547759..2548373 (+) | 615 | WP_128810226.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| VA249_RS11630 (VYA_22120) | lpdA | 2548538..2549968 (-) | 1431 | WP_211916006.1 | dihydrolipoyl dehydrogenase | - |
| VA249_RS11635 (VYA_22130) | aceF | 2550227..2552152 (-) | 1926 | WP_221068082.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23551.67 Da Isoelectric Point: 6.0733
>NTDB_id=83729 VA249_RS11625 WP_128810226.1 2547759..2548373(+) (opaR) [Vibrio alfacsensis strain 04Ya108]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQYSNFLS
DNIDLDLHARENISNITNAMLELVSQDCHWQKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFNGICYSLFVQANRTSNDSELATLTASYLNMLCIYKHEH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQYSNFLS
DNIDLDLHARENISNITNAMLELVSQDCHWQKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFNGICYSLFVQANRTSNDSELATLTASYLNMLCIYKHEH
Nucleotide
Download Length: 615 bp
>NTDB_id=83729 VA249_RS11625 WP_128810226.1 2547759..2548373(+) (opaR) [Vibrio alfacsensis strain 04Ya108]
ATGGATTCAATCGCGAAGAGACCTCGCACTAGGCTTTCCCCACTAAAACGTAAACAGCAACTTATGGAAATTGCGTTAGA
AGTATTCGCACGCCGTGGCATTGGTCGCGGTGGCCATGCCGATATCGCAGATATCGCTCAAGTTTCTGTTGCAACAGTTT
TTAATTACTTCCCAACTCGCGAAGACTTGGTTGATGAAGTACTAAATCATGTTGTTCGTCAATACTCTAACTTCTTATCT
GACAATATCGATTTAGATCTGCATGCTCGCGAAAATATCTCAAATATTACCAACGCGATGCTTGAGTTAGTGAGTCAAGA
CTGTCATTGGCAGAAAGTATGGTTTGAATGGAGCGCATCGACGCGTGATGAGGTTTGGCCTCTATTTGTCTCTACAAATA
GAACGAACCAACTGTTAGTTCAAAACATGTTCATTAAAGCCATTGAGCGAGGTGAAGTCTGCGATCAGCATGAGCCAGAA
CACTTGGCAAACCTGTTCAATGGTATTTGTTACTCGTTGTTCGTCCAAGCCAATCGAACCAGTAATGATAGCGAACTGGC
GACGCTTACCGCCTCTTACCTAAATATGCTTTGTATTTATAAACATGAGCACTAA
ATGGATTCAATCGCGAAGAGACCTCGCACTAGGCTTTCCCCACTAAAACGTAAACAGCAACTTATGGAAATTGCGTTAGA
AGTATTCGCACGCCGTGGCATTGGTCGCGGTGGCCATGCCGATATCGCAGATATCGCTCAAGTTTCTGTTGCAACAGTTT
TTAATTACTTCCCAACTCGCGAAGACTTGGTTGATGAAGTACTAAATCATGTTGTTCGTCAATACTCTAACTTCTTATCT
GACAATATCGATTTAGATCTGCATGCTCGCGAAAATATCTCAAATATTACCAACGCGATGCTTGAGTTAGTGAGTCAAGA
CTGTCATTGGCAGAAAGTATGGTTTGAATGGAGCGCATCGACGCGTGATGAGGTTTGGCCTCTATTTGTCTCTACAAATA
GAACGAACCAACTGTTAGTTCAAAACATGTTCATTAAAGCCATTGAGCGAGGTGAAGTCTGCGATCAGCATGAGCCAGAA
CACTTGGCAAACCTGTTCAATGGTATTTGTTACTCGTTGTTCGTCCAAGCCAATCGAACCAGTAATGATAGCGAACTGGC
GACGCTTACCGCCTCTTACCTAAATATGCTTTGTATTTATAAACATGAGCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
89.216 |
100 |
0.892 |
| hapR | Vibrio cholerae C6706 |
72 |
98.039 |
0.706 |
| hapR | Vibrio cholerae strain A1552 |
72 |
98.039 |
0.706 |