Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U9S62_RS31915 Genome accession   NZ_CP141683
Coordinates   6775562..6776407 (-) Length   281 a.a.
NCBI ID   WP_021018399.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZM21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6770562..6781407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9S62_RS31900 (U9S62_31900) - 6770947..6772038 (-) 1092 WP_010792474.1 hypothetical protein -
  U9S62_RS31905 (U9S62_31905) - 6772846..6773067 (-) 222 WP_010792475.1 hypothetical protein -
  U9S62_RS31910 (U9S62_31910) - 6774136..6775524 (-) 1389 WP_010792476.1 tyrosine-type recombinase/integrase -
  U9S62_RS31915 (U9S62_31915) pilD 6775562..6776407 (-) 846 WP_021018399.1 prepilin peptidase Machinery gene
  U9S62_RS31920 (U9S62_31920) - 6776404..6776808 (-) 405 WP_010792478.1 response regulator -
  U9S62_RS31925 (U9S62_31925) - 6777487..6778011 (-) 525 WP_010792479.1 hypothetical protein -
  U9S62_RS31930 (U9S62_31930) - 6779320..6781254 (+) 1935 WP_021018401.1 hypothetical protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30275.01 Da        Isoelectric Point: 7.5730

>NTDB_id=837245 U9S62_RS31915 WP_021018399.1 6775562..6776407(-) (pilD) [Pseudomonas aeruginosa strain ZM21]
MIEILQADQELFIGIVALVSLMVGSFLNVVAYRLPIMLERAWTIEAQECLGLPSSEPVGRFTLSSPSSACPNCGHKIRPW
ENLPVVSYIALRGKCSGCGTKISITYPAVELATVLLSASLAWHYGVTPAACAAIVLLWMLIALCLIDLKVMLLPDAITLP
ALWLGLVANYFGVFASLHDAVAGAVVGYMTFWTIGKLFYVVRGVEGLGQGDYKLFALFGAWGGWQVLPATLLIASVTTAA
VGMAIRLGRKDRYLPFGPGLIVGGVITLVFGSEINHWLLYR

Nucleotide


Download         Length: 846 bp        

>NTDB_id=837245 U9S62_RS31915 WP_021018399.1 6775562..6776407(-) (pilD) [Pseudomonas aeruginosa strain ZM21]
GTGATTGAAATACTCCAAGCAGACCAAGAACTCTTCATTGGCATCGTTGCGCTTGTGAGCCTCATGGTTGGGAGTTTCCT
CAACGTCGTGGCCTACCGGCTGCCGATCATGCTGGAACGCGCCTGGACAATTGAGGCTCAGGAATGCCTGGGCCTACCCT
CAAGCGAACCAGTTGGCCGGTTCACCCTGTCGTCGCCCTCCTCTGCTTGTCCCAATTGCGGGCACAAGATCCGCCCCTGG
GAAAACCTCCCAGTGGTGAGCTACATCGCGTTACGCGGCAAATGCTCAGGCTGTGGCACCAAGATCAGCATCACTTATCC
TGCCGTTGAGTTGGCGACCGTCCTCCTCTCCGCGTCGCTGGCCTGGCACTACGGTGTAACTCCTGCTGCTTGTGCCGCAA
TAGTGCTGCTGTGGATGCTCATAGCCCTTTGCCTGATCGACCTAAAGGTCATGCTGCTCCCAGATGCGATTACACTTCCA
GCCCTTTGGCTCGGTCTGGTTGCGAACTATTTCGGCGTATTCGCGTCGTTGCACGACGCGGTTGCAGGGGCGGTGGTGGG
ATATATGACGTTCTGGACGATAGGTAAGCTCTTCTACGTCGTCCGCGGTGTCGAGGGCCTGGGCCAAGGTGATTACAAGC
TGTTTGCACTCTTTGGTGCCTGGGGGGGGTGGCAAGTGCTGCCCGCGACTTTGCTGATCGCCAGCGTGACCACTGCTGCT
GTGGGGATGGCGATCAGACTCGGCCGAAAGGACCGCTATCTGCCGTTTGGTCCTGGTCTGATCGTAGGTGGGGTGATCAC
CCTGGTTTTCGGCAGTGAAATCAATCATTGGCTTTTGTACCGGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-124)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

42.049

100

0.423
  pilD Neisseria gonorrhoeae MS11

42.491

97.153

0.413
  pilD Vibrio campbellii strain DS40M4

40.569

100

0.406
  pilD Acinetobacter baumannii D1279779

42.205

93.594

0.395
  pilD Acinetobacter nosocomialis M2

41.825

93.594

0.391