Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VA249_RS06640 Genome accession   NZ_AP024165
Coordinates   1359254..1360675 (-) Length   473 a.a.
NCBI ID   WP_221069473.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1354254..1365675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS06615 (VYA_12030) - 1354768..1355418 (+) 651 WP_221069464.1 thiopurine S-methyltransferase -
  VA249_RS06620 (VYA_12040) purT 1355557..1356732 (-) 1176 WP_221069467.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VA249_RS06625 (VYA_12050) cdd 1356880..1357767 (-) 888 WP_221069469.1 cytidine deaminase -
  VA249_RS06630 (VYA_12060) - 1358142..1358819 (-) 678 WP_211919319.1 LrgB family protein -
  VA249_RS06635 (VYA_12070) - 1358821..1359195 (-) 375 WP_221069471.1 CidA/LrgA family protein -
  VA249_RS06640 (VYA_12080) sbcB 1359254..1360675 (-) 1422 WP_221069473.1 exodeoxyribonuclease I Machinery gene
  VA249_RS06645 (VYA_12090) - 1360873..1361568 (-) 696 WP_221069475.1 NAD(P)H-binding protein -
  VA249_RS06650 (VYA_12100) cobT 1362683..1363729 (+) 1047 WP_221069385.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VA249_RS06655 (VYA_12110) - 1363729..1364532 (+) 804 WP_221069383.1 adenosylcobinamide-GDP ribazoletransferase -
  VA249_RS06660 (VYA_12120) cobU 1364529..1365062 (+) 534 WP_221069477.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54648.96 Da        Isoelectric Point: 5.1806

>NTDB_id=83723 VA249_RS06640 WP_221069473.1 1359254..1360675(-) (sbcB) [Vibrio alfacsensis strain 04Ya108]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGISPQKAMQEGLSEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKFFDYFYSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHQRLYTKREELGGQLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQKCLDNLALLRQHPEIREKLINLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPINLAALDIEFGDKR
IKPLLFRYRARHYPNTLDEQEQRRWTLHCRDVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLVS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=83723 VA249_RS06640 WP_221069473.1 1359254..1360675(-) (sbcB) [Vibrio alfacsensis strain 04Ya108]
ATGCACCAAGACAATCAGCCCACTTTCTTTTTCTTTGACTATGAGACTTGGGGAACAAGCCCAGCCAAAGATCGCCCTAG
CCAATTTGCTGGCGTTCGTACCGATGAGAACTTTAATATCATTGGCGAACCTTTGGTGATGTACTGCCGACCACCCGCGG
ATTATCTCCCGTCTCCAGAGGCTGCTTTGATTACCGGTATTTCACCGCAAAAAGCGATGCAAGAGGGCCTTTCTGAGCCT
GAATTTATTGCAAAAATACACGCTGAGCTCTCTAAGCCAAATACCACAAGTCTTGGATACAACAGCATTCGTTTCGATGA
CGAAGTCACCCGTTATACCTGTTACCGAAACTTTATCGACCCTTATGCATGGAGTTGGCAAAATGGTAACTCGCGCTGGG
ACTTACTCGATGTTATGCGTGCTTGTCACGCTTTGCGTCCTGAGGGCGTGGAGTGGCCAGAAAACGAAGAGGGCTTTACG
AGCTTTAAGCTAGAGCATTTATCAGTGGCAAATGGCATTGAACACAGCAATGCCCATGATGCAATGGCAGATGTCATCGC
TACCATTGAAATGGCCAAAAAAGTCAAAGCTGCACAGCCTAAGTTTTTCGACTACTTCTACTCAATGCGCCACAAGCGTA
AACTTAATGAGTTAGTCGATATCGTCAACATGACGCCATTAATGCACGTTTCTGGCATGTTAGGGCGAGAGTGTCAGTAC
ACCAGTTGGATTGTGCCTGTCGCTTGGCACCCAACCAATAATAATGCGGTTATCACGATTGATTTGGCAAAAGATCCTCA
ACCAATTCTTGAGCTGTCGGCAGAAGAGTTACACCAGCGCTTATACACCAAACGTGAAGAATTAGGCGGTCAACTGCCTG
TGCCGGTAAAACTTGTTCATTTAAACAAGTGCCCTATTCTTGCTCCGGCGAAAACGCTGACGGCCGAAAATGCCGAATCC
ATTGGCATTGATCGTCAGAAATGTCTTGATAACCTTGCCTTGCTGCGTCAACACCCAGAAATTCGTGAGAAGCTCATCAA
CCTATTCTCTATTGAGCGTCAGTTTGAAAAAAGTGATGATGTCGATACACAGCTTTATGACGGTTTCTTCTCACCCGCCG
ATCGTGCAGCAATGGACATCATTCGCGAAACGGATCCTATCAATCTCGCGGCGCTTGATATCGAATTTGGCGATAAACGC
ATAAAACCCTTGCTATTTCGCTACCGAGCACGTCATTATCCAAACACGTTAGATGAACAAGAACAAAGACGCTGGACGCT
CCATTGTCGTGACGTTTTCGAAAGCCAAATCGAAGAGTACATGCTTAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCAGTCTATCGTTATGTAGAGAGTCTAGTCTCATAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.647

100

0.786

Multiple sequence alignment