Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QNM98_RS18345 Genome accession   NZ_CP126226
Coordinates   3708116..3708235 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3703116..3713235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS18320 (QNM98_18320) - 3703553..3703981 (-) 429 WP_284064761.1 DUF1934 domain-containing protein -
  QNM98_RS18325 (QNM98_18325) - 3704135..3704647 (+) 513 Protein_3552 bacteriocin biosynthesis protein AlbG -
  QNM98_RS18330 (QNM98_18330) - 3704654..3705361 (-) 708 WP_061890880.1 hypothetical protein -
  QNM98_RS18335 (QNM98_18335) - 3705401..3706756 (-) 1356 WP_015418438.1 YncE family protein -
  QNM98_RS18340 (QNM98_18340) rapF 3706987..3708132 (+) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  QNM98_RS18345 (QNM98_18345) phrF 3708116..3708235 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QNM98_RS18350 (QNM98_18350) - 3708433..3708636 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  QNM98_RS18355 (QNM98_18355) - 3708650..3708853 (+) 204 WP_007407641.1 hypothetical protein -
  QNM98_RS18360 (QNM98_18360) - 3709158..3709439 (+) 282 WP_045209208.1 hypothetical protein -
  QNM98_RS18365 (QNM98_18365) - 3709483..3709995 (+) 513 WP_031378560.1 stage II sporulation protein M -
  QNM98_RS18370 (QNM98_18370) - 3710586..3710804 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QNM98_RS18375 (QNM98_18375) speB 3710972..3711844 (-) 873 WP_007407646.1 agmatinase -
  QNM98_RS18380 (QNM98_18380) speE 3711903..3712733 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=837216 QNM98_RS18345 WP_015240778.1 3708116..3708235(+) (phrF) [Bacillus velezensis strain B31]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=837216 QNM98_RS18345 WP_015240778.1 3708116..3708235(+) (phrF) [Bacillus velezensis strain B31]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462