Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   QNM98_RS02000 Genome accession   NZ_CP126226
Coordinates   397310..397429 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 392310..402429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS01985 (QNM98_01985) - 393922..394605 (+) 684 WP_014416901.1 response regulator transcription factor -
  QNM98_RS01990 (QNM98_01990) - 394592..396025 (+) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -
  QNM98_RS01995 (QNM98_01995) rapC 396178..397326 (+) 1149 WP_033575082.1 Rap family tetratricopeptide repeat protein Regulator
  QNM98_RS02000 (QNM98_02000) phrC 397310..397429 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QNM98_RS02005 (QNM98_02005) - 397576..397671 (-) 96 WP_076983091.1 YjcZ family sporulation protein -
  QNM98_RS02010 (QNM98_02010) - 397766..399130 (-) 1365 WP_033575080.1 aspartate kinase -
  QNM98_RS02015 (QNM98_02015) ceuB 399544..400497 (+) 954 WP_061890422.1 ABC transporter permease Machinery gene
  QNM98_RS02020 (QNM98_02020) - 400487..401434 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QNM98_RS02025 (QNM98_02025) - 401428..402186 (+) 759 WP_015416812.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=837153 QNM98_RS02000 WP_033575081.1 397310..397429(+) (phrC) [Bacillus velezensis strain B31]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=837153 QNM98_RS02000 WP_033575081.1 397310..397429(+) (phrC) [Bacillus velezensis strain B31]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744