Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNM98_RS01790 Genome accession   NZ_CP126226
Coordinates   335428..335865 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330428..340865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS01765 (QNM98_01765) - 331448..332584 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  QNM98_RS01770 (QNM98_01770) - 332599..333033 (+) 435 WP_007409358.1 RDD family protein -
  QNM98_RS01775 (QNM98_01775) - 333105..333428 (+) 324 WP_007409357.1 YckD family protein -
  QNM98_RS01780 (QNM98_01780) - 333532..334968 (+) 1437 WP_256683712.1 family 1 glycosylhydrolase -
  QNM98_RS01785 (QNM98_01785) nin/comJ 335009..335407 (-) 399 WP_100261594.1 competence protein ComJ Regulator
  QNM98_RS01790 (QNM98_01790) nucA/comI 335428..335865 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNM98_RS01795 (QNM98_01795) hxlB 336196..336753 (-) 558 WP_256683714.1 6-phospho-3-hexuloisomerase -
  QNM98_RS01800 (QNM98_01800) hxlA 336750..337385 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  QNM98_RS01805 (QNM98_01805) - 337617..337979 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=837150 QNM98_RS01790 WP_003156588.1 335428..335865(-) (nucA/comI) [Bacillus velezensis strain B31]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=837150 QNM98_RS01790 WP_003156588.1 335428..335865(-) (nucA/comI) [Bacillus velezensis strain B31]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641