Detailed information NTG0083702

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JLZ01_RS08515
• Genome accession: NZ_AP024155
• Coordinates: 1639317..1640177 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain TUM 19855
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1634317..1645177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLZ01_RS08500 (TUM19855C_16410)	dapD	1634827..1635648 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
JLZ01_RS08505 (TUM19855C_16420)	pgi	1635858..1637501 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
JLZ01_RS08510 (TUM19855C_16430)	pilG	1638011..1639243 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
JLZ01_RS08515 (TUM19855C_16440)	pilD	1639317..1640177 (+)	861	WP_003689814.1	A24 family peptidase	Machinery gene
JLZ01_RS08520 (TUM19855C_16450)	coaE	1640174..1640806 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
JLZ01_RS08525	-	1640799..1641008 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
JLZ01_RS08530 (TUM19855C_16460)	pilF	1641094..1642770 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JLZ01_RS08540 (TUM19855C_16470)	-	1643108..1643554 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
JLZ01_RS08545 (TUM19855C_16480)	-	1643558..1644532 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
JLZ01_RS08555 (TUM19855C_16490)	rplU	1644756..1645064 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=83702 JLZ01_RS08515 WP_003689814.1 1639317..1640177(+) (pilD) [Neisseria gonorrhoeae strain TUM 19855]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=83702 JLZ01_RS08515 WP_003689814.1 1639317..1640177(+) (pilD) [Neisseria gonorrhoeae strain TUM 19855]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441