Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U3O62_RS06040 Genome accession   NZ_CP141581
Coordinates   1229661..1230398 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ECO-104     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224661..1235398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3O62_RS06010 (U3O62_06010) yfiL 1224819..1225184 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  U3O62_RS06015 (U3O62_06015) aroF 1225394..1226464 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  U3O62_RS06020 (U3O62_06020) tyrA 1226475..1227596 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U3O62_RS06025 (U3O62_06025) pheA 1227639..1228799 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  U3O62_RS06030 (U3O62_06030) pheL 1228898..1228945 (-) 48 WP_010723158.1 phe operon leader peptide -
  U3O62_RS06035 (U3O62_06035) raiA 1229049..1229390 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U3O62_RS06040 (U3O62_06040) comL 1229661..1230398 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  U3O62_RS06045 (U3O62_06045) rluD 1230533..1231513 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U3O62_RS06050 (U3O62_06050) yfiH 1231510..1232241 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  U3O62_RS06055 (U3O62_06055) clpC 1232371..1234944 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=837007 U3O62_RS06040 WP_000197686.1 1229661..1230398(-) (comL) [Escherichia coli strain ECO-104]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=837007 U3O62_RS06040 WP_000197686.1 1229661..1230398(-) (comL) [Escherichia coli strain ECO-104]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376