Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO975_RS04950 Genome accession   NZ_AP026961
Coordinates   1025260..1025775 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC20-72C-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020260..1030775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO975_RS04905 (EC2072C1_09570) csrA 1020847..1021032 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  OO975_RS04935 (EC2072C1_09580) yqaB 1022490..1023056 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO975_RS04940 (EC2072C1_09590) yqaA 1023053..1023481 (+) 429 WP_001287454.1 YqaA family protein -
  OO975_RS04945 (EC2072C1_09600) gshA 1023554..1025110 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  OO975_RS04950 (EC2072C1_09610) luxS 1025260..1025775 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  OO975_RS04955 (EC2072C1_09620) emrB 1025839..1027377 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO975_RS04960 (EC2072C1_09630) emrA 1027394..1028566 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO975_RS04965 (EC2072C1_09640) emrR 1028693..1029223 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO975_RS04970 (EC2072C1_09650) ygaH 1029314..1029649 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  OO975_RS04975 (EC2072C1_09660) ygaZ 1029639..1030376 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=83689 OO975_RS04950 WP_001130211.1 1025260..1025775(+) (luxS) [Escherichia coli strain EC20-72C-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=83689 OO975_RS04950 WP_001130211.1 1025260..1025775(+) (luxS) [Escherichia coli strain EC20-72C-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment