Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OH686_RS21460 Genome accession   NZ_CP126126
Coordinates   4493302..4493973 (+) Length   223 a.a.
NCBI ID   WP_289535102.1    Uniprot ID   -
Organism   Pseudomonas sp. SO81     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4488302..4498973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH686_RS21440 (OH686_22030) lolD 4488410..4489093 (+) 684 WP_289535097.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OH686_RS21445 (OH686_22035) - 4489095..4490339 (+) 1245 WP_289535099.1 lipoprotein-releasing ABC transporter permease subunit -
  OH686_RS21450 (OH686_22040) - 4490376..4490903 (-) 528 WP_137971803.1 DUF2062 domain-containing protein -
  OH686_RS21455 (OH686_22045) comA 4491000..4493228 (+) 2229 WP_289535101.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OH686_RS21460 (OH686_22050) exbB 4493302..4493973 (+) 672 WP_289535102.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OH686_RS21465 (OH686_22055) - 4493970..4494401 (+) 432 WP_289535104.1 biopolymer transporter ExbD -
  OH686_RS21470 (OH686_22060) lpxK 4494398..4495402 (+) 1005 WP_289535105.1 tetraacyldisaccharide 4'-kinase -
  OH686_RS21475 (OH686_22065) - 4495438..4495623 (+) 186 WP_137971807.1 Trm112 family protein -
  OH686_RS21480 (OH686_22070) kdsB 4495624..4496385 (+) 762 WP_289535107.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OH686_RS21485 (OH686_22075) - 4496385..4496849 (+) 465 WP_289535109.1 low molecular weight protein-tyrosine-phosphatase -
  OH686_RS21490 (OH686_22080) murB 4496846..4497865 (+) 1020 WP_289535110.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24080.45 Da        Isoelectric Point: 9.9156

>NTDB_id=836785 OH686_RS21460 WP_289535102.1 4493302..4493973(+) (exbB) [Pseudomonas sp. SO81]
MWELVKSGGWMMLPIILSSIVAAGITAERLWTLRASRIAPAHLLGQVWLWIKEKKLTNDKLKELRANSPLGQILAAGLAN
SKHGREIMKECIEEAAGRVIHDLERYLNTLGTIAGIAPLLGLLGTVLGMIDIFSAFMGTHMANASVLAGGIAKALITTAA
GLFVAIPALFFHRFLVRRVDELVVGMEQEAIKLVEVVQGDRDVDLGNGSAPAPKEARKESKKA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=836785 OH686_RS21460 WP_289535102.1 4493302..4493973(+) (exbB) [Pseudomonas sp. SO81]
GTGTGGGAGCTGGTCAAATCTGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCTATCGTTGCCGCCGGCATCACTGC
CGAACGTCTCTGGACCCTGCGCGCCAGCCGTATCGCGCCTGCCCATCTGCTGGGCCAGGTGTGGCTGTGGATCAAGGAAA
AGAAGCTCACCAACGACAAGCTCAAGGAGCTGCGTGCCAACTCGCCGCTGGGGCAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGGTCGCGTCATCCATGATCTGGAGCGCTACCT
CAACACCCTCGGCACCATCGCCGGCATCGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCACCCACATGGCCAACGCCTCGGTGCTCGCCGGTGGTATCGCCAAAGCCCTGATCACTACCGCCGCC
GGCCTGTTCGTGGCCATCCCGGCGCTGTTCTTCCACCGCTTCCTGGTGCGTCGTGTCGACGAGCTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGACGTCGACCTGGGCAACGGCAGCGCCCCCGCGCCGA
AAGAAGCCCGCAAAGAGAGCAAGAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.286

94.17

0.794