Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U7118_RS17320 Genome accession   NZ_CP141283
Coordinates   3192948..3193595 (-) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187948..3198595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS17295 (U7118_17295) nsrR 3189547..3189987 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  U7118_RS17300 (U7118_17300) lytF 3190139..3191605 (+) 1467 WP_069964079.1 peptidoglycan endopeptidase LytF -
  U7118_RS17305 (U7118_17305) yhdC 3191646..3191969 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  U7118_RS17310 (U7118_17310) yhdB 3192170..3192412 (+) 243 WP_003233373.1 YhdB family protein -
  U7118_RS17315 (U7118_17315) yhdA 3192427..3192951 (-) 525 WP_038829245.1 FMN-dependent NADPH-azoreductase -
  U7118_RS17320 (U7118_17320) vraR 3192948..3193595 (-) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  U7118_RS17325 (U7118_17325) yhcY 3193592..3194731 (-) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  U7118_RS17330 (U7118_17330) pgcA 3194880..3196625 (-) 1746 WP_014479288.1 phosphoglucomutase -
  U7118_RS17335 (U7118_17335) glpD 3196757..3198424 (-) 1668 WP_324271340.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=836774 U7118_RS17320 WP_069837394.1 3192948..3193595(-) (vraR) [Bacillus subtilis strain DKU_09]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=836774 U7118_RS17320 WP_069837394.1 3192948..3193595(-) (vraR) [Bacillus subtilis strain DKU_09]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409